| Age | Commit message (Expand) | Author |
|---|
| 2021-06-07 | gn3: db: sort imports | BonfaceKilz |
| 2021-06-03 | gn3: db: Remove "escape_string" from imports•••We use prepared statements, so no need to have this.
| BonfaceKilz |
| 2021-06-03 | Use prepared statements for FETCH sql function | BonfaceKilz |
| 2021-06-03 | gn3: db: Replace items() with keys()•••* gn3/db/__init__.py (diff_from_dict): We only use the keys of the dict!
| BonfaceKilz |
| 2021-06-03 | Use prepared statements for UPDATE sql function | BonfaceKilz |
| 2021-06-03 | tests: test_audit: Update test case to check for prepared statements | BonfaceKilz |
| 2021-06-03 | gn3: db: Add new function for doing sql INSERT | BonfaceKilz |
| 2021-06-03 | sql: Add a new folder that houses sql statements for new tables | BonfaceKilz |
| 2021-06-03 | Add data structures for the table metadata_audit | BonfaceKilz |
| 2021-06-03 | gn3: db: Add spacing before around "AND" in sql clause | BonfaceKilz |
| 2021-06-03 | unit: test_phenotypes: Test for multiple "WHERE" clauses | BonfaceKilz |
| 2021-06-03 | Get the diff between 2 dicts and return that as a dict | BonfaceKilz |
| 2021-06-03 | gn3: db: Return None if data and where are empty | BonfaceKilz |
| 2021-05-30 | fix index error (#16) | Alexander Kabui |
| 2021-05-26 | Move the methods, "update" and "fetch", to gn3.db | BonfaceKilz |
| 2021-05-26 | db: phenotypes: Fix publication_mapping | BonfaceKilz |
| 2021-05-26 | db: phenotypes: Fix typo | BonfaceKilz |
| 2021-05-25 | Include code that processes rqtl output files and returns actual results inst... | zsloan |
| 2021-05-20 | tests: test_phenotype: Add function that tests "fetchone" | BonfaceKilz |
| 2021-05-20 | db: phenotypes: Add function for fetching a single result•••* gn3/db/phenotypes.py (fetchone): New function.
| BonfaceKilz |
| 2021-05-20 | db: phenotypes: Add a dataclass map•••Maps a string to it's dataclass.
| BonfaceKilz |
| 2021-05-20 | db: phenotypes: Add Publication table mapping | BonfaceKilz |
| 2021-05-20 | db: phenotypes: Rename phenotype_column_mapping | BonfaceKilz |
| 2021-05-20 | db: phenotypes: Add Publication dataclass and mapping | BonfaceKilz |
| 2021-05-20 | db: phenotypes: Update failing tests | BonfaceKilz |
| 2021-05-20 | db: phenotypes: Generalise the update function•••* gn3/db/phenotypes.py (update_phenotype): Delete it.
(update): New, more general function.
| BonfaceKilz |
| 2021-05-20 | db: phenotypes: Map a table to it's relevant dict mapping | BonfaceKilz |
| 2021-05-20 | db: phenotypes: Add type for Dataclass•••See: https://www.py4u.net/discuss/188952
| BonfaceKilz |
| 2021-05-20 | db: phenotypes: Put mapping def after dataclass | BonfaceKilz |
| 2021-05-20 | db: phenotypes: Add phenotype table mapping | BonfaceKilz |
| 2021-05-20 | db: phenotypes: Add dataclass to represent PublishXRef | BonfaceKilz |
| 2021-05-20 | db: phenotype: Make "pylint: disable=[R0902]" global for file | BonfaceKilz |
| 2021-05-20 | tests: test_phenotypes: New test cases for loading phenotypes | BonfaceKilz |
| 2021-05-20 | db: phenotypes: Add a way of updating the Phenotype table•••* gn3/db/phenotypes.py (Phenotype): New dataclass.
(update_phenotype): New function.
[phenotype_column_mapping]: New variable.
| BonfaceKilz |
| 2021-05-19 | Merge branch 'main' of https://github.com/genenetwork/genenetwork3 into featu... | zsloan |
| 2021-05-19 | Add r-optparse to guix.scm | Pjotr Prins |
| 2021-05-19 | Temporarily replace forward-slashes with underscores, since they can be inclu... | zsloan |
| 2021-05-19 | Merge branch 'main' of https://github.com/genenetwork/genenetwork3 into featu... | zsloan |
| 2021-05-19 | Added R and r-qtl | Pjotr Prins |
| 2021-05-19 | More SQL optimization trials | Pjotr Prins |
| 2021-05-19 | Fix SQL query | Pjotr Prins |
| 2021-05-19 | SQL query gives different result | Pjotr Prins |
| 2021-05-19 | New SQL approach | Pjotr Prins |
| 2021-05-18 | Added test for compose_rqtl_cmd in tests/unit/test_commands.py | zsloan |
| 2021-05-18 | Removed len from this if statement, since an empty list evaluates to False by... | zsloan |
| 2021-05-18 | Added unit test for computations/rqtl.py | zsloan |
| 2021-05-18 | Account for boolean kwargs in compute() by storing them in a list, since they... | zsloan |
| 2021-05-18 | Account for boolean kwargs in compose_rqtl_cmd | zsloan |
| 2021-05-18 | Fixed generate_rqtl_cmd to make the kwarg hash from a combination of keywords... | zsloan |
| 2021-05-18 | Slow SQL: add note | Pjotr Prins |
