| Age | Commit message (Expand) | Author |
|---|---|---|
| 2022-09-30 | Add escape char to avoid error notice. | Frederick Muriuki Muriithi |
| 2022-09-29 | Use the built-in csv module for file output...Use the built-in csv module for file output in order to avoid subtle errors in the formats. | Frederick Muriuki Muriithi |
| 2022-09-06 | Update link to continuous deployment....* README.md: Update link to continuous deployment. | Arun Isaac |
| 2022-08-30 | Update test: include port in parsed data from mysql uri | Frederick Muriuki Muriithi |
| 2022-08-25 | revert for commit 6db3b2af8fc09999996d3acc09890a06f179c669;Bug | Alexander_Kabui |
| 2022-08-23 | Remove conn.commit() and conn.rollback()...* gn3/db/__init__.py (update): Delete conn.commit() and conn.rollback() (insert): Ditto. * gn3/db/case_attributes.py (insert_case_attribute_audit): Ditto. (reject_case_attribute): Ditto. (approve_case_attribute): Ditto. * gn3/db/sample_data.py (update_sample_data): Ditto. (delete_sample_data): Ditto. (insert_sample_data): Ditto. | Munyoki Kilyungi |
| 2022-08-22 | Use non-default MySQL port if present...By default, MySQL/Mariadb connects at port 3306, however, the configuration variable `SQL_URI` could contain a different port. In that case, this commit allows the system to connect to the non-default port. | Frederick Muriuki Muriithi |
| 2022-08-12 | Add mandatory/expected fields to parsed data. | Frederick Muriuki Muriithi |
| 2022-08-10 | Fix returned value for 'parse_correlation_output'...* Always return dict * Fix internal '__parse_line__' to always have a valid return | Frederick Muriuki Muriithi |
| 2022-08-10 | code refactoring | Frederick Muriuki Muriithi |
| 2022-08-10 | remove unnecessary parsing of floats | Alexander_Kabui |
| 2022-08-10 | code refactoring | Frederick Muriuki Muriithi |
| 2022-08-10 | remove unnecessary parsing of floats | Alexander_Kabui |
| 2022-08-10 | enhancements for rust tissue | Frederick Muriuki Muriithi |
| 2022-08-10 | pylint fixes | Alexander_Kabui |
| 2022-08-10 | update test;parse output | Alexander_Kabui |
| 2022-08-10 | code refactoring | Alexander_Kabui |
| 2022-08-10 | remove unnessary code | Alexander_Kabui |
| 2022-08-10 | remove unnecessary parsing of floats | Alexander_Kabui |
| 2022-08-10 | merge for results | Alexander_Kabui |
| 2022-08-10 | enhancements for rust tissue | Alexander_Kabui |
| 2022-08-03 | Refactor: Remove unnecessary whitespace and name | Frederick Muriuki Muriithi |
| 2022-08-03 | Refactor: Remove unnecessary iterations and name...* remove extra iteration that is unnecessary * remove unnecessary variables | Frederick Muriuki Muriithi |
| 2022-07-29 | New script to run sample correlations...* README.md: update mypy's invocation * scripts/argparse_actions.py: new file - implement custom FileCheck action for argparse * scripts/sample_correlations.py: new file - implement new script to run sample correlations in an external process | Frederick Muriuki Muriithi |
| 2022-07-29 | Fix failing tests...* gn3/computations/correlations.py: rename function * mypy.ini: deactivate mypy error about missing imports * tests/integration/test_correlation.py: mock correct function * tests/unit/computations/test_correlation.py: test correct function | Frederick Muriuki Muriithi |
| 2022-07-28 | Add command to run the sample correlations in an external process | Frederick Muriuki Muriithi |
| 2022-07-28 | Update sample correlations code to use multiprocessing...* To help speed up the processing of the correlations, convert the `compute_all_sample_correlation` function to use the multiprocessing module. | Frederick Muriuki Muriithi |
| 2022-07-22 | mypy fixes | Alexander_Kabui |
| 2022-07-22 | pep8 fixes | Alexander_Kabui |
| 2022-07-22 | linting and tests fixes | Alexander_Kabui |
| 2022-07-22 | import rust_correlation when running gn3 as lib | Alexander_Kabui |
| 2022-07-22 | compute num overlap | Alexander_Kabui |
| 2022-07-22 | fix for bug splitting list data | Alexander_Kabui |
| 2022-07-22 | minor fixes for parsing data | Alexander_Kabui |
| 2022-07-22 | code to parse tissue correlation input | Alexander_Kabui |
| 2022-07-22 | mypy pylint fixes | Alexander_Kabui |
| 2022-07-22 | code to fetch correct sample corr data | Alexander_Kabui |
| 2022-07-22 | delete dead_code;rename variables | Alexander_Kabui |
| 2022-07-22 | add unittests | Alexander_Kabui |
| 2022-07-22 | minor fixes | Alexander_Kabui |
| 2022-07-11 | Allow CORS everywhere by default...Allow the resources (endpoints) to be accessible from anywhere on the internet by default, while still allowing for restriction via CLI environment variable on a case by case basis. | Frederick Muriuki Muriithi |
| 2022-06-29 | use explicit parameters | Alexander_Kabui |
| 2022-06-29 | fix issues | Alexander_Kabui |
| 2022-06-29 | lint test file | Alexander |
| 2022-06-29 | pylint fixes | Alexander |
| 2022-06-29 | add tests | Alexander |
| 2022-06-29 | add test data | Alexander |
| 2022-06-29 | minor fixes | Alexander |
| 2022-06-29 | handle tmp files generation | Alexander |
| 2022-06-29 | parse output data | Alexander |
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