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AgeCommit message (Expand)Author
2021-03-23Use ipfs to get genotype filesBonfaceKilz
2021-03-23Apply auto-pep8 formattingBonfaceKilz
2021-03-23guix.scm: Add missing moduleBonfaceKilz
2021-03-23Add function to cache ipfs filesBonfaceKilz
2021-03-23Apply autopep-8BonfaceKilz
2021-03-23Re-add mypy conf fileBonfaceKilz
2021-03-17gn3: computations: correlations: Apply autopep-8.BonfaceKilz
2021-03-17gn3: file_utils: Apply autopep-8BonfaceKilz
2021-03-17guix.scm: Add ipfs-httpclient & sqlalchemy-stubs and sort the inputsBonfaceKilz
2021-03-17README: Update instructions on how to freeze packagesBonfaceKilz
2021-03-17Add python-ipfshttpclient and it's depsBonfaceKilz
2021-03-17README: Add extra note on depsBonfaceKilz
2021-03-17README: Add note on how to force install things in venvBonfaceKilz
2021-03-16delete unwanted correlation stuff (#5)Alexander Kabui
2021-03-16Refactor/clean up correlations (#4)Alexander Kabui
2021-03-15Remove undefined variableBonfaceKilz
2021-03-15Bump up numpy to 1.20.1BonfaceKilz
2021-03-15Add sqlalchemy-stubs as a requirementBonfaceKilz
2021-03-15Add a basic mypy init fileBonfaceKilz
2021-03-15Apply pep-8 formattingBonfaceKilz
2021-03-15Delete redundant gn3/config.pyBonfaceKilz
2021-03-13Correlation api (#2)Alexander Kabui
2021-03-10Update docs with k-gwa endpoints demoBonfaceKilz
2021-03-10Add basic docs on k and gwa related endpointsBonfaceKilz
2021-03-10Add missing "/" in URL in docstringBonfaceKilz
2021-03-10Rename "covariates" to "covars" in endpoints for consistencyBonfaceKilz
2021-03-10Use the correct id to fetch cmd statusBonfaceKilz
2021-03-10Queue the command only onceBonfaceKilz
2021-03-10Fix k-compute command when "loco" is trueBonfaceKilz
2021-03-10Fix encoding issues with workerBonfaceKilz
2021-03-10Use the correct redis cmd when updating variablesBonfaceKilz
2021-03-10Use correct queue name in workerBonfaceKilz
2021-03-10Call Redis hset correctly in the right orderBonfaceKilz
2021-03-10Update test to ensure redis.hset is called correctlyBonfaceKilz
2021-03-10Apply yapf file formatting to fileBonfaceKilz
2021-03-10Add extra endpoint for when TOKEN isn't providedBonfaceKilz
2021-03-10Extract file to the correct locationBonfaceKilz
2021-03-10Add extra tests for file utilsBonfaceKilz
2021-03-10Run yapf-formatter against fileBonfaceKilz
2021-03-08Remove unused importsBonfaceKilz
2021-03-08Delete "generate_gemma_computation_cmd"BonfaceKilz
2021-03-08Remove "/k-gwa-computation"BonfaceKilz
2021-03-08Add "/k-gwa-compute/covars/loco/<chromosomes>/maf/<maf>/<token>"BonfaceKilz
2021-03-08Add "/gemma/k-gwa-compute/loco/<chromosomes>/maf/<maf>/<token>"BonfaceKilz
2021-03-08Add "/k-gwa-compute/covars/<token>"BonfaceKilz
2021-03-08Add "/gemma/k-gwa-compute/<token>"BonfaceKilz
2021-03-08Update jupyter notebook with more endpointsBonfaceKilz
2021-03-08Replace "compute_k_values" with "generate_gemma_cmd"BonfaceKilz
2021-03-08Use new "compute_k_values" procedureBonfaceKilz
2021-03-08Add generic fn for computing k and gwa valuesBonfaceKilz
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