| Age | Commit message (Expand) | Author |
|---|
| 2021-06-18 | pep8 formatting | Alexander Kabui |
| 2021-06-18 | add tests to setup packages | Alexander Kabui |
| 2021-06-18 | add types and dataset names | Alexander Kabui |
| 2021-06-18 | initial commit for queries perfomance tests | Alexander Kabui |
| 2021-06-18 | db: test_db: Add extra variable in test data for "id" | BonfaceKilz |
| 2021-06-18 | Rename json_data column to json_diff_data | BonfaceKilz |
| 2021-06-18 | gn3: db: Fix how columns from tables is resolved | BonfaceKilz |
| 2021-06-18 | gn3: db: Add "id_" property to metadata_audit class and mapping | BonfaceKilz |
| 2021-06-18 | tests: test_db: Add a test-case for fetchall | BonfaceKilz |
| 2021-06-18 | gn3: db: Add "fetchall" method. | BonfaceKilz |
| 2021-06-18 | gn3: metadata_audit: Make props for MetadataAudit class optional | BonfaceKilz |
| 2021-06-18 | gn3: db: Make "WHERE" clause optional•••* gn3/db/__init__.py (fetchone): Make "WHERE" an Optional arg.
| BonfaceKilz |
| 2021-06-18 | gn3: db: Use correct DATACLASSMAP entry from metadata_audit | BonfaceKilz |
| 2021-06-18 | tests: test_db: Rename TestPhenotype | BonfaceKilz |
| 2021-06-18 | tests: test_phenotype: Rename to test_db | BonfaceKilz |
| 2021-06-18 | gn3: db: sort imports | BonfaceKilz |
| 2021-06-18 | gn3: db: Remove "escape_string" from imports•••We use prepared statements, so no need to have this.
| BonfaceKilz |
| 2021-06-18 | Use prepared statements for FETCH sql function | BonfaceKilz |
| 2021-06-18 | gn3: db: Replace items() with keys()•••* gn3/db/__init__.py (diff_from_dict): We only use the keys of the dict!
| BonfaceKilz |
| 2021-06-18 | Use prepared statements for UPDATE sql function | BonfaceKilz |
| 2021-06-18 | tests: test_audit: Update test case to check for prepared statements | BonfaceKilz |
| 2021-06-18 | gn3: db: Add new function for doing sql INSERT | BonfaceKilz |
| 2021-06-18 | sql: Add a new folder that houses sql statements for new tables | BonfaceKilz |
| 2021-06-18 | Add data structures for the table metadata_audit | BonfaceKilz |
| 2021-06-18 | gn3: db: Add spacing before around "AND" in sql clause | BonfaceKilz |
| 2021-06-18 | unit: test_phenotypes: Test for multiple "WHERE" clauses | BonfaceKilz |
| 2021-06-18 | Get the diff between 2 dicts and return that as a dict | BonfaceKilz |
| 2021-06-18 | gn3: db: Return None if data and where are empty | BonfaceKilz |
| 2021-06-18 | fix index error (#16) | Alexander Kabui |
| 2021-06-18 | Move the methods, "update" and "fetch", to gn3.db | BonfaceKilz |
| 2021-06-18 | db: phenotypes: Fix publication_mapping | BonfaceKilz |
| 2021-06-18 | db: phenotypes: Fix typo | BonfaceKilz |
| 2021-06-18 | tests: test_phenotype: Add function that tests "fetchone" | BonfaceKilz |
| 2021-06-18 | db: phenotypes: Add function for fetching a single result•••* gn3/db/phenotypes.py (fetchone): New function.
| BonfaceKilz |
| 2021-06-18 | db: phenotypes: Add a dataclass map•••Maps a string to it's dataclass.
| BonfaceKilz |
| 2021-06-18 | db: phenotypes: Add Publication table mapping | BonfaceKilz |
| 2021-06-18 | db: phenotypes: Rename phenotype_column_mapping | BonfaceKilz |
| 2021-06-18 | db: phenotypes: Add Publication dataclass and mapping | BonfaceKilz |
| 2021-06-18 | db: phenotypes: Update failing tests | BonfaceKilz |
| 2021-06-18 | db: phenotypes: Generalise the update function•••* gn3/db/phenotypes.py (update_phenotype): Delete it.
(update): New, more general function.
| BonfaceKilz |
| 2021-06-18 | db: phenotypes: Map a table to it's relevant dict mapping | BonfaceKilz |
| 2021-06-18 | db: phenotypes: Add type for Dataclass•••See: https://www.py4u.net/discuss/188952
| BonfaceKilz |
| 2021-06-18 | db: phenotypes: Put mapping def after dataclass | BonfaceKilz |
| 2021-06-18 | db: phenotypes: Add phenotype table mapping | BonfaceKilz |
| 2021-06-18 | db: phenotypes: Add dataclass to represent PublishXRef | BonfaceKilz |
| 2021-06-18 | db: phenotype: Make "pylint: disable=[R0902]" global for file | BonfaceKilz |
| 2021-06-18 | tests: test_phenotypes: New test cases for loading phenotypes | BonfaceKilz |
| 2021-06-18 | db: phenotypes: Add a way of updating the Phenotype table•••* gn3/db/phenotypes.py (Phenotype): New dataclass.
(update_phenotype): New function.
[phenotype_column_mapping]: New variable.
| BonfaceKilz |
| 2021-06-18 | Fixed issue where all bool kwargs were always being passed to generate_rqtl_c... | zsloan |
| 2021-06-18 | Added option for enabling permutation strata•••Fixed issue where covariates with numerical names were being ignored
Fixed issue where the hash filename wasn't being used for the permutation output
| zsloan |
