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2022-06-29new variable: CORRELATION_COMMANDAlexander
2022-06-29init test correlation rust moduleAlexander
2022-06-29init rust correlation moduleAlexander
2022-06-28Parse the method from UI before passing it to external processFrederick Muriuki Muriithi
2022-06-21tests: test_file_utils: Replace pytest.mark.skip with unittest.skipBonfaceKilz
2022-06-21setup.py: Remove commented out "ipfshttpclient" lineBonfaceKilz
2022-06-21gn3: fs_helpers: Fix pylint errorsBonfaceKilz
2022-06-21test_file_utils: Disable test cases for "cache_ipfs_file"BonfaceKilz
2022-06-21gn3: fs_helpers: Remove ipfshttpclientBonfaceKilz
2022-06-21setup.py: Remove ipfshttpclientBonfaceKilz
2022-06-21integration: test_gemma: Skip "GemmaAPITest"BonfaceKilz
2022-06-21Replace lint code with human-readable textBonfaceKilz
2022-06-21db: correlations: Ignore pylint errorBonfaceKilz
2022-06-21db: correlations: Ignore typesBonfaceKilz
2022-06-21db: datasets.py: Ignore results from sparql.queryAndConvertBonfaceKilz
2022-06-21mypy.ini: Ignore missing lmdb mypy stubsBonfaceKilz
2022-06-20Update README: export env variables explicitlyFrederick Muriuki Muriithi
2022-06-20gn3: genodb: Retire get function.Arun Isaac
2022-06-20gn3: genodb: Match class and function names of GenotypeMatrix.Arun Isaac
2022-06-20gn3: genodb: Remove db, nrows and ncols fields from GenotypeMatrix.Arun Isaac
2022-06-20gn3: genodb: Mention reading entire matrix in module docstring.Arun Isaac
2022-06-20Restrict partial correlation method choicesFrederick Muriuki Muriithi
2022-06-17gn3: genodb: Rename Matrix named tuple to GenotypeMatrix.Arun Isaac
2022-06-17gn3: genodb: Allow retrieval of the entire genotype matrix.Arun Isaac
2022-06-17gn3: genodb: Read optimized storage for the current matrix.Arun Isaac
2022-06-09gn3: genodb: Remove blank line in module docstring.Arun Isaac
2022-06-09gn3: genodb: Rewrite without classes.Arun Isaac
2022-06-08gn3: genodb: Support reading columns.Arun Isaac
2022-06-08gn3: genodb: Read only the most recent genotype matrix.Arun Isaac
2022-06-08gn3: genodb: Open genotype database in read-only mode.Arun Isaac
2022-06-08gn3: genodb: Do not create genotype database if it does not exist.Arun Isaac
2022-06-08gn3: genodb: Decide on little endianness.Arun Isaac
2022-06-08gn3: genodb: Do not terminate database strings with null.Arun Isaac
2022-06-03gn3: Add genodb.Arun Isaac
2022-05-31Remove unnecessary statementFrederick Muriuki Muriithi
2022-05-31Extract utility functions from `fetch_all_database_data`Frederick Muriuki Muriithi
2022-05-30Pass trait data as args to `fix_strains` and fix some bugsFrederick Muriuki Muriithi
2022-05-27Move sql for CRUD operations on case-attrs from gn2 to gn3BonfaceKilz
2022-05-27Move sql for modifying case-attributes from gn2 to gn3BonfaceKilz
2022-05-27sql: caseattributes_audit.sql: New fileBonfaceKilz
2022-05-27Return all the results from CaseAttributes column as isBonfaceKilz
2022-05-26Add Endpoint to get menu items for use in UIFrederick Muriuki Muriithi
2022-05-24Run partial correlations with external scriptFrederick Muriuki Muriithi
2022-05-24Fix some linting issuesFrederick Muriuki Muriithi
2022-05-24New script to compute partial correlationsFrederick Muriuki Muriithi
2022-05-21Fix linting errorsFrederick Muriuki Muriithi
2022-05-21Use multiprocessing to improve performanceFrederick Muriuki Muriithi
2022-05-21Process primary, target and control traits in a single iterationFrederick Muriuki Muriithi
2022-05-21Return generator object rather than tuplesFrederick Muriuki Muriithi
2022-05-16Run computation in one-shot asynchronous processFrederick Muriuki Muriithi
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