Age | Commit message (Expand) | Author |
2021-06-22 | scripts: laminar: Add json with hooks for running a linter | BonfaceKilz |
2021-06-22 | scripts: laminar: Add sh scripts for CI | BonfaceKilz |
2021-06-21 | Merge pull request #20 from genenetwork/feature/biweight-correlation...add biweight r script and tests | BonfaceKilz |
2021-06-20 | minor fix docstring | Alexander Kabui |
2021-06-20 | merge main | Alexander Kabui |
2021-06-20 | fix conflict | Alexander Kabui |
2021-06-20 | make requested changes to biweight | Alexander Kabui |
2021-06-18 | Merge pull request #13 from zsloan/feature/add_rqtl_endpoints...Feature/add rqtl endpoints | zsloan |
2021-06-18 | Fixed another error where test_generate_rqtl_command didn't include the filen... | zsloan |
2021-06-18 | Fixed file type from json to csv for test_generate_rqtl_command | zsloan |
2021-06-18 | Fixed test_rqtl.py to include Rscript in the command | zsloan |
2021-06-18 | Fixed test_compose_rqtl_command test; forgot to include Rscript in the command | zsloan |
2021-06-18 | Change test_compose_rqtl_command in test_commands.py to have different argume......Changed some parameters in test_compose_rqtl_cmd to avoid pylint complaining about duplicate code
| zsloan |
2021-06-18 | Fixed pylint issues | zsloan |
2021-06-18 | add ignore_missing_imports for numpy in mypy.ini since it complains about tha... | zsloan |
2021-06-18 | Resolve mypy errors in computations/rqtl.py | zsloan |
2021-06-18 | Fixed spelling of coeffient to coefficient | zsloan |
2021-06-18 | minor fixes | Alexander Kabui |
2021-06-18 | remove ununsed variables | Alexander Kabui |
2021-06-18 | refactor perf query functions | Alexander Kabui |
2021-06-18 | rename perf query file | Alexander Kabui |
2021-06-18 | pep8 formatting | Alexander Kabui |
2021-06-18 | add tests to setup packages | Alexander Kabui |
2021-06-18 | add types and dataset names | Alexander Kabui |
2021-06-18 | initial commit for queries perfomance tests | Alexander Kabui |
2021-06-18 | db: test_db: Add extra variable in test data for "id" | BonfaceKilz |
2021-06-18 | Rename json_data column to json_diff_data | BonfaceKilz |
2021-06-18 | gn3: db: Fix how columns from tables is resolved | BonfaceKilz |
2021-06-18 | gn3: db: Add "id_" property to metadata_audit class and mapping | BonfaceKilz |
2021-06-18 | tests: test_db: Add a test-case for fetchall | BonfaceKilz |
2021-06-18 | gn3: db: Add "fetchall" method. | BonfaceKilz |
2021-06-18 | gn3: metadata_audit: Make props for MetadataAudit class optional | BonfaceKilz |
2021-06-18 | gn3: db: Make "WHERE" clause optional...* gn3/db/__init__.py (fetchone): Make "WHERE" an Optional arg.
| BonfaceKilz |
2021-06-18 | gn3: db: Use correct DATACLASSMAP entry from metadata_audit | BonfaceKilz |
2021-06-18 | tests: test_db: Rename TestPhenotype | BonfaceKilz |
2021-06-18 | tests: test_phenotype: Rename to test_db | BonfaceKilz |
2021-06-18 | gn3: db: sort imports | BonfaceKilz |
2021-06-18 | gn3: db: Remove "escape_string" from imports...We use prepared statements, so no need to have this.
| BonfaceKilz |
2021-06-18 | Use prepared statements for FETCH sql function | BonfaceKilz |
2021-06-18 | gn3: db: Replace items() with keys()...* gn3/db/__init__.py (diff_from_dict): We only use the keys of the dict!
| BonfaceKilz |
2021-06-18 | Use prepared statements for UPDATE sql function | BonfaceKilz |
2021-06-18 | tests: test_audit: Update test case to check for prepared statements | BonfaceKilz |
2021-06-18 | gn3: db: Add new function for doing sql INSERT | BonfaceKilz |
2021-06-18 | sql: Add a new folder that houses sql statements for new tables | BonfaceKilz |
2021-06-18 | Add data structures for the table metadata_audit | BonfaceKilz |
2021-06-18 | gn3: db: Add spacing before around "AND" in sql clause | BonfaceKilz |
2021-06-18 | unit: test_phenotypes: Test for multiple "WHERE" clauses | BonfaceKilz |
2021-06-18 | Get the diff between 2 dicts and return that as a dict | BonfaceKilz |
2021-06-18 | gn3: db: Return None if data and where are empty | BonfaceKilz |
2021-06-18 | fix index error (#16) | Alexander Kabui |