| Age | Commit message (Expand) | Author |
|---|
| 2021-06-29 | guix: Remove commented out hunk | BonfaceKilz |
| 2021-06-29 | gn3: diff: Set success_codes when running the diff tool | BonfaceKilz |
| 2021-06-29 | gn3: commands: Add extra arg that sets the success codes to check•••* gn3/commands.py (run_cmd): Some commands like "diff" return non-standard
error codes. To make this fn more robust, add an extra optional argument that
sets what successful codes to check.
| BonfaceKilz |
| 2021-06-29 | tests: test_commands: Add extra check for when an error occurs | BonfaceKilz |
| 2021-06-29 | Add a diffing function•••For now the diff function uses the Linux tool "diff" to generate the diff
since it is efficient and straightforward.
* gn3/computations/diff.py (generate_diff): New function.
* tests/unit/computations/test_diff.py: Test cases for ☝🏾.
| BonfaceKilz |
| 2021-06-29 | tests: test_data: Add test data that contains trait data for 10007 | BonfaceKilz |
| 2021-06-25 | Check for the correct result code•••When programs terminate with an error, they usually return a -1!
| BonfaceKilz |
| 2021-06-23 | Merge pull request #21 from genenetwork/fix/biweight-errors•••Fix/biweight errors | BonfaceKilz |
| 2021-06-23 | fix pylint issues | Alexander Kabui |
| 2021-06-23 | minor fixes for biweight script | Alexander Kabui |
| 2021-06-22 | scripts: laminar: Add json with hooks for running a linter | BonfaceKilz |
| 2021-06-22 | scripts: laminar: Add sh scripts for CI | BonfaceKilz |
| 2021-06-21 | Merge pull request #20 from genenetwork/feature/biweight-correlation•••add biweight r script and tests | BonfaceKilz |
| 2021-06-20 | minor fix docstring | Alexander Kabui |
| 2021-06-20 | merge main | Alexander Kabui |
| 2021-06-20 | fix conflict | Alexander Kabui |
| 2021-06-20 | make requested changes to biweight | Alexander Kabui |
| 2021-06-18 | Merge pull request #13 from zsloan/feature/add_rqtl_endpoints•••Feature/add rqtl endpoints | zsloan |
| 2021-06-18 | Fixed another error where test_generate_rqtl_command didn't include the filen... | zsloan |
| 2021-06-18 | Fixed file type from json to csv for test_generate_rqtl_command | zsloan |
| 2021-06-18 | Fixed test_rqtl.py to include Rscript in the command | zsloan |
| 2021-06-18 | Fixed test_compose_rqtl_command test; forgot to include Rscript in the command | zsloan |
| 2021-06-18 | Change test_compose_rqtl_command in test_commands.py to have different argume...•••Changed some parameters in test_compose_rqtl_cmd to avoid pylint complaining about duplicate code
| zsloan |
| 2021-06-18 | Fixed pylint issues | zsloan |
| 2021-06-18 | add ignore_missing_imports for numpy in mypy.ini since it complains about tha... | zsloan |
| 2021-06-18 | Resolve mypy errors in computations/rqtl.py | zsloan |
| 2021-06-18 | Fixed spelling of coeffient to coefficient | zsloan |
| 2021-06-18 | minor fixes | Alexander Kabui |
| 2021-06-18 | remove ununsed variables | Alexander Kabui |
| 2021-06-18 | refactor perf query functions | Alexander Kabui |
| 2021-06-18 | rename perf query file | Alexander Kabui |
| 2021-06-18 | pep8 formatting | Alexander Kabui |
| 2021-06-18 | add tests to setup packages | Alexander Kabui |
| 2021-06-18 | add types and dataset names | Alexander Kabui |
| 2021-06-18 | initial commit for queries perfomance tests | Alexander Kabui |
| 2021-06-18 | db: test_db: Add extra variable in test data for "id" | BonfaceKilz |
| 2021-06-18 | Rename json_data column to json_diff_data | BonfaceKilz |
| 2021-06-18 | gn3: db: Fix how columns from tables is resolved | BonfaceKilz |
| 2021-06-18 | gn3: db: Add "id_" property to metadata_audit class and mapping | BonfaceKilz |
| 2021-06-18 | tests: test_db: Add a test-case for fetchall | BonfaceKilz |
| 2021-06-18 | gn3: db: Add "fetchall" method. | BonfaceKilz |
| 2021-06-18 | gn3: metadata_audit: Make props for MetadataAudit class optional | BonfaceKilz |
| 2021-06-18 | gn3: db: Make "WHERE" clause optional•••* gn3/db/__init__.py (fetchone): Make "WHERE" an Optional arg.
| BonfaceKilz |
| 2021-06-18 | gn3: db: Use correct DATACLASSMAP entry from metadata_audit | BonfaceKilz |
| 2021-06-18 | tests: test_db: Rename TestPhenotype | BonfaceKilz |
| 2021-06-18 | tests: test_phenotype: Rename to test_db | BonfaceKilz |
| 2021-06-18 | gn3: db: sort imports | BonfaceKilz |
| 2021-06-18 | gn3: db: Remove "escape_string" from imports•••We use prepared statements, so no need to have this.
| BonfaceKilz |
| 2021-06-18 | Use prepared statements for FETCH sql function | BonfaceKilz |
| 2021-06-18 | gn3: db: Replace items() with keys()•••* gn3/db/__init__.py (diff_from_dict): We only use the keys of the dict!
| BonfaceKilz |
