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2021-06-23minor fixes for biweight scriptAlexander Kabui
2021-06-22scripts: laminar: Add json with hooks for running a linterBonfaceKilz
2021-06-22scripts: laminar: Add sh scripts for CIBonfaceKilz
2021-06-21Merge pull request #20 from genenetwork/feature/biweight-correlation...add biweight r script and testsBonfaceKilz
2021-06-20minor fix docstringAlexander Kabui
2021-06-20merge mainAlexander Kabui
2021-06-20fix conflictAlexander Kabui
2021-06-20make requested changes to biweightAlexander Kabui
2021-06-18Merge pull request #13 from zsloan/feature/add_rqtl_endpoints...Feature/add rqtl endpointszsloan
2021-06-18Fixed another error where test_generate_rqtl_command didn't include the filen...zsloan
2021-06-18Fixed file type from json to csv for test_generate_rqtl_commandzsloan
2021-06-18Fixed test_rqtl.py to include Rscript in the commandzsloan
2021-06-18Fixed test_compose_rqtl_command test; forgot to include Rscript in the commandzsloan
2021-06-18Change test_compose_rqtl_command in test_commands.py to have different argume......Changed some parameters in test_compose_rqtl_cmd to avoid pylint complaining about duplicate code zsloan
2021-06-18Fixed pylint issueszsloan
2021-06-18add ignore_missing_imports for numpy in mypy.ini since it complains about tha...zsloan
2021-06-18Resolve mypy errors in computations/rqtl.pyzsloan
2021-06-18Fixed spelling of coeffient to coefficientzsloan
2021-06-18minor fixesAlexander Kabui
2021-06-18remove ununsed variablesAlexander Kabui
2021-06-18refactor perf query functionsAlexander Kabui
2021-06-18rename perf query fileAlexander Kabui
2021-06-18pep8 formattingAlexander Kabui
2021-06-18add tests to setup packagesAlexander Kabui
2021-06-18add types and dataset namesAlexander Kabui
2021-06-18initial commit for queries perfomance testsAlexander Kabui
2021-06-18db: test_db: Add extra variable in test data for "id"BonfaceKilz
2021-06-18Rename json_data column to json_diff_dataBonfaceKilz
2021-06-18gn3: db: Fix how columns from tables is resolvedBonfaceKilz
2021-06-18gn3: db: Add "id_" property to metadata_audit class and mappingBonfaceKilz
2021-06-18tests: test_db: Add a test-case for fetchallBonfaceKilz
2021-06-18gn3: db: Add "fetchall" method.BonfaceKilz
2021-06-18gn3: metadata_audit: Make props for MetadataAudit class optionalBonfaceKilz
2021-06-18gn3: db: Make "WHERE" clause optional...* gn3/db/__init__.py (fetchone): Make "WHERE" an Optional arg. BonfaceKilz
2021-06-18gn3: db: Use correct DATACLASSMAP entry from metadata_auditBonfaceKilz
2021-06-18tests: test_db: Rename TestPhenotypeBonfaceKilz
2021-06-18tests: test_phenotype: Rename to test_dbBonfaceKilz
2021-06-18gn3: db: sort importsBonfaceKilz
2021-06-18gn3: db: Remove "escape_string" from imports...We use prepared statements, so no need to have this. BonfaceKilz
2021-06-18Use prepared statements for FETCH sql functionBonfaceKilz
2021-06-18gn3: db: Replace items() with keys()...* gn3/db/__init__.py (diff_from_dict): We only use the keys of the dict! BonfaceKilz
2021-06-18Use prepared statements for UPDATE sql functionBonfaceKilz
2021-06-18tests: test_audit: Update test case to check for prepared statementsBonfaceKilz
2021-06-18gn3: db: Add new function for doing sql INSERTBonfaceKilz
2021-06-18sql: Add a new folder that houses sql statements for new tablesBonfaceKilz
2021-06-18Add data structures for the table metadata_auditBonfaceKilz
2021-06-18gn3: db: Add spacing before around "AND" in sql clauseBonfaceKilz
2021-06-18unit: test_phenotypes: Test for multiple "WHERE" clausesBonfaceKilz
2021-06-18Get the diff between 2 dicts and return that as a dictBonfaceKilz
2021-06-18gn3: db: Return None if data and where are emptyBonfaceKilz
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