| Age | Commit message (Expand) | Author |
|---|
| 2021-05-08 | Add python-mysqlclient as a dependency | BonfaceKilz |
| 2021-05-05 | Merge pull request #9 from genenetwork/Feature/speed-up-correlation•••Feature/speed up correlation | BonfaceKilz |
| 2021-05-03 | add default no of cores | Alexander Kabui |
| 2021-05-03 | modify default SQL_URI | Alexander Kabui |
| 2021-05-03 | add trait_id fix mypy issues | Alexander Kabui |
| 2021-05-03 | minor fixes for tiss correlation tests and naming | Alexander Kabui |
| 2021-05-03 | replace database with conn | Alexander Kabui |
| 2021-05-02 | remove trait and dataset blueprint | Alexander Kabui |
| 2021-05-02 | delete dataset and trait files | Alexander Kabui |
| 2021-04-20 | pep8 formatting | Alexander Kabui |
| 2021-04-20 | add experiment function for computing tissue correlation using multiprocessing | Alexander Kabui |
| 2021-04-18 | refactor:return trait_name in corr_results | Alexander Kabui |
| 2021-04-17 | ad pep8 formatting | Alexander Kabui |
| 2021-04-17 | refactor tests for lit | Alexander Kabui |
| 2021-04-17 | add sort for correlation results•••refactor return data type for tissue and lit
| Alexander Kabui |
| 2021-04-16 | add benchmark function for sample r | Alexander Kabui |
| 2021-04-16 | benchmark normal function for sample r | Alexander Kabui |
| 2021-04-15 | optimization for sample correlation | Alexander Kabui |
| 2021-04-15 | test endpoint for fetching probeset data types | Alexander Kabui |
| 2021-04-12 | replace experimental db | Alexander Kabui |
| 2021-04-12 | fix tests for lit correlation | Alexander Kabui |
| 2021-04-12 | fix merge conflict | Alexander Kabui |
| 2021-04-12 | Integrate correlation API•••- add new api for gn2-gn3 sample r integration
- delete map for sample list to values
- add db util file
- add python msql-client dependency
- add db for fetching lit correlation results
- add unittests for db utils
- add tests for db_utils
- modify api for fetching lit correlation results
- refactor Mock Database Connector and unittests
- add sql url parser
- add SQL URI env variable
- refactor code for db utils
- modify return data for lit correlation
- refactor tissue correlation endpoint
- replace db_instance with conn | Alexander Kabui |
| 2021-04-06 | add mock db for tests | Alexander Kabui |
| 2021-04-06 | fix Docstrings | Alexander Kabui |
| 2021-04-06 | delete unnecessary functions and comments | Alexander Kabui |
| 2021-04-05 | fix for fetching dataset traits data | Alexander Kabui |
| 2021-04-04 | refactor code for trait data•••modify unittest and integration tests for datasets
| Alexander Kabui |
| 2021-04-04 | fix:db connection | Alexander Kabui |
| 2021-04-03 | add tests for getting trait data | Alexander Kabui |
| 2021-04-01 | add mysqclient to requirements file | Alexander Kabui |
| 2021-03-31 | add mysqlclient in guix•••add env variable for GN2_URL
| Alexander Kabui |
| 2021-03-31 | add fetch dataset strain id,strain name and unittests | Alexander Kabui |
| 2021-03-31 | add temp_db setup and integration tests | Alexander Kabui |
| 2021-03-31 | add datasets functions and endpoints | Alexander Kabui |
| 2021-03-30 | refactor retrieve trait sample data and tests | Alexander Kabui |
| 2021-03-30 | modify getting sample data from db | Alexander Kabui |
| 2021-03-30 | register trait blueprint | Alexander Kabui |
| 2021-03-30 | initial commit for creating dataset | Alexander Kabui |
| 2021-03-30 | initial commit for creating trait and datasets | Alexander Kabui |
| 2021-03-23 | Convert Path object to a str•••* gn3/file_utils.py (cache_ipfs_file): Return a str instead of a path object.
* tests/unit/test_file_utils.py: Update failing tests.
| BonfaceKilz |
| 2021-03-23 | Update Gemma docs | BonfaceKilz |
| 2021-03-23 | Update where cached file is stored | BonfaceKilz |
| 2021-03-23 | Use ipfs to get genotype files | BonfaceKilz |
| 2021-03-23 | Apply auto-pep8 formatting | BonfaceKilz |
| 2021-03-23 | guix.scm: Add missing module | BonfaceKilz |
| 2021-03-23 | Add function to cache ipfs files | BonfaceKilz |
| 2021-03-23 | Apply autopep-8 | BonfaceKilz |
| 2021-03-23 | Re-add mypy conf file•••Deleted in 56ce88a
| BonfaceKilz |
| 2021-03-17 | gn3: computations: correlations: Apply autopep-8. | BonfaceKilz |
