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-rw-r--r--tests/integration/test_gemma.py27
1 files changed, 27 insertions, 0 deletions
diff --git a/tests/integration/test_gemma.py b/tests/integration/test_gemma.py
index e434dab..5f4e52b 100644
--- a/tests/integration/test_gemma.py
+++ b/tests/integration/test_gemma.py
@@ -149,3 +149,30 @@ class GemmaAPITest(unittest.TestCase):
key="status")
self.assertEqual(response.get_json(),
{"status": "test"})
+
+ @mock.patch("gn3.api.gemma.queue_cmd")
+ @mock.patch("gn3.api.gemma.generate_gemma_computation_cmd")
+ @mock.patch("gn3.api.gemma.get_hash_of_files")
+ @mock.patch("gn3.api.gemma.jsonfile_to_dict")
+ def test_k_compute(self, mock_json, mock_hash, mock_cmd,
+ mock_queue_cmd):
+ """Test /gemma/k-compute/<token>"""
+ mock_queue_cmd.return_value = "my-unique-id"
+ mock_json.return_value = {
+ "geno": "genofile.txt",
+ "pheno": "phenofile.txt",
+ "snps": "snpfile.txt",
+ }
+ mock_hash.return_value = "hash"
+ mock_cmd.return_value = ("gemma-wrapper --json -- "
+ "-debug -g "
+ "genotype_name.txt "
+ "-p traitfilename.txt "
+ "-a genotype_snps.txt "
+ "-gk > k_output_filename.json")
+ response = self.app.post("/gemma/k-compute/test-data")
+ self.assertEqual(response.get_json(), {
+ "output_file": "hash-k-output.json",
+ "status": "queued",
+ "unique_id": "my-unique-id"
+ })