diff options
Diffstat (limited to 'tests')
| -rw-r--r-- | tests/integration/conftest.py | 42 | ||||
| -rw-r--r-- | tests/integration/test_partial_correlations.py | 1 |
2 files changed, 36 insertions, 7 deletions
diff --git a/tests/integration/conftest.py b/tests/integration/conftest.py index be927a4..2977ca9 100644 --- a/tests/integration/conftest.py +++ b/tests/integration/conftest.py @@ -1,8 +1,10 @@ """Module that holds fixtures for integration tests""" import pytest +import MySQLdb from gn3.app import create_app -from gn3.db_utils import database_connector +from gn3.random import random_string +from gn3.db_utils import parse_db_url, database_connector @pytest.fixture(scope="session") def client(): @@ -15,10 +17,38 @@ def client(): # Do some teardown/cleanup -@pytest.fixture +@pytest.fixture(scope="session") def db_conn(): """Create a db connection fixture for tests""" - ## Update this to use temp db once that is in place - conn = database_connector() - yield conn - conn.close() + # 01) Generate random string to append to all test db artifacts for the session + rand_str = random_string(15) + live_db_details = parse_db_url() + test_db_name = f"test_{live_db_details[3]}_{rand_str}" + # + # 02) Create new test db + # Use context manager to ensure the live connection is automatically + # closed on exit + with database_connector() as live_db_conn: + with live_db_conn.cursor() as live_db_cursor: + live_db_cursor.execute(f"CREATE DATABASE {test_db_name}") + # + # 03) Copy over table structure from source db into test db + live_db_cursor.execute("SHOW TABLES;") + queries = ( + f"CREATE TABLE {test_db_name}.{row[0]} AS SELECT * FROM {row[0]} WHERE 1=0;" + for row in live_db_cursor.fetchall()) + for query in queries: + live_db_cursor.execute(query) + # + # 04) get database connection to test db and yield it up + test_db_conn = MySQLdb.connect( + live_db_details[0], live_db_details[1], live_db_details[2], + test_db_name) + yield test_db_conn + # + # 05) Clean up after ourselves + # a.) Close the test db connection + test_db_conn.close() + # + # b.) Delete the test database + live_db_cursor.execute(f"DROP DATABASE IF EXISTS {test_db_name}") diff --git a/tests/integration/test_partial_correlations.py b/tests/integration/test_partial_correlations.py index 4bf352a..d249b42 100644 --- a/tests/integration/test_partial_correlations.py +++ b/tests/integration/test_partial_correlations.py @@ -212,7 +212,6 @@ def test_partial_correlation_api_with_non_existent_control_traits(client, post_d # difficult to test for these without a temp database with the temp # traits data set to something we are in control of ) - def test_part_corr_api_with_mix_of_existing_and_non_existing_control_traits( db_conn, primary, controls, method, target): """ |