diff options
Diffstat (limited to 'tests/unit')
| -rw-r--r-- | tests/unit/computations/test_heatmap.py | 37 |
1 files changed, 36 insertions, 1 deletions
diff --git a/tests/unit/computations/test_heatmap.py b/tests/unit/computations/test_heatmap.py index 650cb45..686288d 100644 --- a/tests/unit/computations/test_heatmap.py +++ b/tests/unit/computations/test_heatmap.py @@ -1,6 +1,10 @@ """Module contains tests for gn3.computations.heatmap""" from unittest import TestCase -from gn3.computations.heatmap import cluster_traits, export_trait_data +from gn3.computations.heatmap import ( + cluster_traits, + export_trait_data, + compute_heatmap_order, + retrieve_strains_and_values) strainlist = ["B6cC3-1", "BXD1", "BXD12", "BXD16", "BXD19", "BXD2"] trait_data = { @@ -34,6 +38,16 @@ trait_data = { "C57BL/6J": {"strain_name": "C57BL/6J", "value": 7.50606, "variance": None, "ndata": None}, "DBA/2J": {"strain_name": "DBA/2J", "value": 7.72588, "variance": None, "ndata": None}}} +slinked = ( + (((0, 2, 0.16381088984330505), + ((1, 7, 0.06024619831474998), 5, 0.19179284676938602), + 0.20337048635536847), + 9, + 0.23451785425383564), + ((3, (6, 8, 0.2140799896286565), 0.25879514152086425), + 4, 0.8968250491499363), + 0.9313185954797953) + class TestHeatmap(TestCase): """Class for testing heatmap computation functions""" @@ -141,3 +155,24 @@ class TestHeatmap(TestCase): 0.9313185954797953, 1.1683723389247052, 0.23451785425383564, 1.7413442197913358, 0.33370067057028485, 1.3256191648260216, 0.0))) + + def test_compute_heatmap_order(self): + """Test the orders.""" + for xoff, expected in [ + (40, ((60, 9), (60, 4))), + (30, ((50, 9), (50, 4))), + (20, ((40, 9), (40, 4)))]: + with self.subTest(xoffset=xoff): + self.assertEqual( + compute_heatmap_order(slinked, xoffset=xoff), expected) + + def test_retrieve_strains_and_values(self): + """Test retrieval of strains and values.""" + for slist, tdata, expected in [ + [["s1", "s2", "s3", "s4"], [9, None, 5, 4], + (("s1", "s3", "s4"), (9, 5, 4))], + [["s1", "s2", "s3", "s4", "s5"], [6, None, None, 4, None], + (("s1", "s4"), (6, 4))]]: + with self.subTest(strainlist=slist, traitdata=tdata): + self.assertEqual( + retrieve_strains_and_values(slist, tdata), expected) |