aboutsummaryrefslogtreecommitdiff
path: root/tests/unit
diff options
context:
space:
mode:
Diffstat (limited to 'tests/unit')
-rw-r--r--tests/unit/computations/test_biweight.py16
-rw-r--r--tests/unit/computations/test_correlation.py2
2 files changed, 9 insertions, 9 deletions
diff --git a/tests/unit/computations/test_biweight.py b/tests/unit/computations/test_biweight.py
index 3045f78..ad404f1 100644
--- a/tests/unit/computations/test_biweight.py
+++ b/tests/unit/computations/test_biweight.py
@@ -2,20 +2,20 @@
from unittest import TestCase
from unittest import mock
-from gn3.computations.biweight import call_biweight_script
+from gn3.computations.biweight import calculate_biweight_corr
class TestBiweight(TestCase):
"""test class for biweight"""
@mock.patch("gn3.computations.biweight.subprocess.check_output")
- def test_call_biweight_script(self, mock_check_output):
- """test for call_biweight_script func"""
+ def test_calculate_biweight_corr(self, mock_check_output):
+ """test for calculate_biweight_corr func"""
mock_check_output.return_value = "0.1 0.5"
- results = call_biweight_script(command="Rscript",
- path_to_script="./r_script.R",
- trait_vals=[
- 1.2, 1.1, 1.9],
- target_vals=[1.9, 0.4, 1.1])
+ results = calculate_biweight_corr(command="Rscript",
+ path_to_script="./r_script.R",
+ trait_vals=[
+ 1.2, 1.1, 1.9],
+ target_vals=[1.9, 0.4, 1.1])
self.assertEqual(results, (0.1, 0.5))
diff --git a/tests/unit/computations/test_correlation.py b/tests/unit/computations/test_correlation.py
index 606f96d..b1bc6ef 100644
--- a/tests/unit/computations/test_correlation.py
+++ b/tests/unit/computations/test_correlation.py
@@ -98,7 +98,7 @@ class TestCorrelation(TestCase):
self.assertEqual(results, expected_results)
- @mock.patch("gn3.computations.correlations.call_biweight_script")
+ @mock.patch("gn3.computations.correlations.calculate_biweight_corr")
def test_bicor(self, mock_biweight):
"""Test for doing biweight mid correlation """
mock_biweight.return_value = (1.0, 0.0)