diff options
Diffstat (limited to 'tests/unit/test_commands.py')
| -rw-r--r-- | tests/unit/test_commands.py | 4 |
1 files changed, 2 insertions, 2 deletions
diff --git a/tests/unit/test_commands.py b/tests/unit/test_commands.py index 4dd8735..de0918a 100644 --- a/tests/unit/test_commands.py +++ b/tests/unit/test_commands.py @@ -61,7 +61,7 @@ class TestCommands(unittest.TestCase): def test_compose_rqtl_cmd(self): """Test that the R/qtl cmd is composed correctly""" self.assertEqual( - compose_rqtl_cmd(rqtl_wrapper_cmd="rqtl-wrapper", + compose_rqtl_cmd(rqtl_wrapper_cmd="scripts/rqtl-wrapper", rqtl_wrapper_kwargs={ "g": "the_genofile", "p": "the_phenofile", @@ -74,7 +74,7 @@ class TestCommands(unittest.TestCase): rqtl_wrapper_bool_kwargs=[ "addcovar" ]), - ("Rscript rqtl-wrapper " + ("Rscript scripts/rqtl-wrapper " "--g the_genofile --p the_phenofile " "--model np --method ehk " "--nperm 2000 --scale Mb " |