aboutsummaryrefslogtreecommitdiff
path: root/tests/unit/db
diff options
context:
space:
mode:
Diffstat (limited to 'tests/unit/db')
-rw-r--r--tests/unit/db/test_traits.py33
1 files changed, 24 insertions, 9 deletions
diff --git a/tests/unit/db/test_traits.py b/tests/unit/db/test_traits.py
index 4aa9389..75f3d4c 100644
--- a/tests/unit/db/test_traits.py
+++ b/tests/unit/db/test_traits.py
@@ -202,8 +202,6 @@ class TestTraitsDBFunctions(TestCase):
"""
# pylint: disable=C0103
db_mock = mock.MagicMock()
-
- STRAIN_ID_SQL: str = "UPDATE Strain SET Name = %s WHERE Id = %s"
PUBLISH_DATA_SQL: str = (
"UPDATE PublishData SET value = %s "
"WHERE StrainId = %s AND Id = %s")
@@ -216,16 +214,33 @@ class TestTraitsDBFunctions(TestCase):
with db_mock.cursor() as cursor:
type(cursor).rowcount = 1
+ mock_fetchone = mock.MagicMock()
+ mock_fetchone.return_value = (1, 1)
+ type(cursor).fetchone = mock_fetchone
self.assertEqual(update_sample_data(
conn=db_mock, strain_name="BXD11",
- strain_id=10, publish_data_id=8967049,
- value=18.7, error=2.3, count=2),
- (1, 1, 1, 1))
+ trait_name="1",
+ phenotype_id=10, value=18.7,
+ error=2.3, count=2),
+ (1, 1, 1))
cursor.execute.assert_has_calls(
- [mock.call(STRAIN_ID_SQL, ('BXD11', 10)),
- mock.call(PUBLISH_DATA_SQL, (18.7, 10, 8967049)),
- mock.call(PUBLISH_SE_SQL, (2.3, 10, 8967049)),
- mock.call(N_STRAIN_SQL, (2, 10, 8967049))]
+ [mock.call('SELECT Strain.Id, PublishData.Id FROM'
+ ' (PublishData, Strain, PublishXRef, '
+ 'PublishFreeze) LEFT JOIN PublishSE ON '
+ '(PublishSE.DataId = PublishData.Id '
+ 'AND PublishSE.StrainId = '
+ 'PublishData.StrainId) LEFT JOIN NStrain ON '
+ '(NStrain.DataId = PublishData.Id AND '
+ 'NStrain.StrainId = PublishData.StrainId) WHERE '
+ 'PublishXRef.InbredSetId = '
+ 'PublishFreeze.InbredSetId AND PublishData.Id = '
+ 'PublishXRef.DataId AND PublishXRef.Id = 1 AND '
+ 'PublishXRef.PhenotypeId = 10 AND '
+ 'PublishData.StrainId = Strain.Id AND '
+ 'Strain.Name = "BXD11"'),
+ mock.call(PUBLISH_DATA_SQL, (18.7, 1, 1)),
+ mock.call(PUBLISH_SE_SQL, (2.3, 1, 1)),
+ mock.call(N_STRAIN_SQL, (2, 1, 1))]
)
def test_set_haveinfo_field(self):