diff options
Diffstat (limited to 'tests/unit/db/test_traits.py')
| -rw-r--r-- | tests/unit/db/test_traits.py | 33 |
1 files changed, 24 insertions, 9 deletions
diff --git a/tests/unit/db/test_traits.py b/tests/unit/db/test_traits.py index 4aa9389..75f3d4c 100644 --- a/tests/unit/db/test_traits.py +++ b/tests/unit/db/test_traits.py @@ -202,8 +202,6 @@ class TestTraitsDBFunctions(TestCase): """ # pylint: disable=C0103 db_mock = mock.MagicMock() - - STRAIN_ID_SQL: str = "UPDATE Strain SET Name = %s WHERE Id = %s" PUBLISH_DATA_SQL: str = ( "UPDATE PublishData SET value = %s " "WHERE StrainId = %s AND Id = %s") @@ -216,16 +214,33 @@ class TestTraitsDBFunctions(TestCase): with db_mock.cursor() as cursor: type(cursor).rowcount = 1 + mock_fetchone = mock.MagicMock() + mock_fetchone.return_value = (1, 1) + type(cursor).fetchone = mock_fetchone self.assertEqual(update_sample_data( conn=db_mock, strain_name="BXD11", - strain_id=10, publish_data_id=8967049, - value=18.7, error=2.3, count=2), - (1, 1, 1, 1)) + trait_name="1", + phenotype_id=10, value=18.7, + error=2.3, count=2), + (1, 1, 1)) cursor.execute.assert_has_calls( - [mock.call(STRAIN_ID_SQL, ('BXD11', 10)), - mock.call(PUBLISH_DATA_SQL, (18.7, 10, 8967049)), - mock.call(PUBLISH_SE_SQL, (2.3, 10, 8967049)), - mock.call(N_STRAIN_SQL, (2, 10, 8967049))] + [mock.call('SELECT Strain.Id, PublishData.Id FROM' + ' (PublishData, Strain, PublishXRef, ' + 'PublishFreeze) LEFT JOIN PublishSE ON ' + '(PublishSE.DataId = PublishData.Id ' + 'AND PublishSE.StrainId = ' + 'PublishData.StrainId) LEFT JOIN NStrain ON ' + '(NStrain.DataId = PublishData.Id AND ' + 'NStrain.StrainId = PublishData.StrainId) WHERE ' + 'PublishXRef.InbredSetId = ' + 'PublishFreeze.InbredSetId AND PublishData.Id = ' + 'PublishXRef.DataId AND PublishXRef.Id = 1 AND ' + 'PublishXRef.PhenotypeId = 10 AND ' + 'PublishData.StrainId = Strain.Id AND ' + 'Strain.Name = "BXD11"'), + mock.call(PUBLISH_DATA_SQL, (18.7, 1, 1)), + mock.call(PUBLISH_SE_SQL, (2.3, 1, 1)), + mock.call(N_STRAIN_SQL, (2, 1, 1))] ) def test_set_haveinfo_field(self): |