diff options
Diffstat (limited to 'tests/unit/db/test_sample_data.py')
| -rw-r--r-- | tests/unit/db/test_sample_data.py | 27 |
1 files changed, 21 insertions, 6 deletions
diff --git a/tests/unit/db/test_sample_data.py b/tests/unit/db/test_sample_data.py index dad7169..af00393 100644 --- a/tests/unit/db/test_sample_data.py +++ b/tests/unit/db/test_sample_data.py @@ -154,7 +154,6 @@ def test_update_sample_data(mocker): mock_conn = mocker.MagicMock() strain_id, data_id, inbredset_id = 1, 17373, 20 with mock_conn.cursor() as cursor: - # cursor.fetchone.side_effect = (0, [19, ], 0) mocker.patch( "gn3.db.sample_data.get_sample_data_ids", return_value=(strain_id, data_id, inbredset_id), @@ -164,19 +163,20 @@ def test_update_sample_data(mocker): update_sample_data( conn=mock_conn, trait_name=35, - original_data="BXD1,18,x,0,x", - updated_data="BXD1,x,2,1,F", - csv_header="Strain Name,Value,SE,Count,Sex", + original_data="BXD1,18,x,0,x,M,x,Red", + updated_data="BXD1,x,2,1,2,F,2,Green", + csv_header="Strain Name,Value,SE,Count,pH,Sex (13),Age,Color", phenotype_id=10007, ) # pylint: disable=[E1101] gn3.db.sample_data.insert_sample_data.assert_called_once_with( conn=mock_conn, trait_name=35, - data="BXD1,2,F", - csv_header="Strain Name,SE,Sex", + data="BXD1,2,2,2", + csv_header="Strain Name,SE,pH,Age", phenotype_id=10007, ) + # pylint: disable=[E1101] gn3.db.sample_data.delete_sample_data.assert_called_once_with( conn=mock_conn, @@ -185,12 +185,27 @@ def test_update_sample_data(mocker): csv_header="Strain Name,Value", phenotype_id=10007, ) + cursor.execute.assert_has_calls( [ mocker.call( "UPDATE NStrain SET count = %s " "WHERE StrainId = %s AND DataId = %s", ("1", strain_id, data_id), + ), + mocker.call( + "UPDATE CaseAttributeXRefNew SET Value = %s " + "WHERE StrainId = %s AND CaseAttributeId = %s AND " + "InbredSetId = %s", + ("F", strain_id, "13", inbredset_id), + ), + mocker.call( + "UPDATE CaseAttributeXRefNew SET Value = %s " + "WHERE StrainId = %s AND CaseAttributeId = " + "(SELECT CaseAttributeId FROM " + "CaseAttribute WHERE Name = %s) " + "AND InbredSetId = %s", + ("Green", strain_id, "Color", inbredset_id), ) ], any_order=False, |