diff options
Diffstat (limited to 'tests/unit/db/test_datasets.py')
| -rw-r--r-- | tests/unit/db/test_datasets.py | 42 |
1 files changed, 21 insertions, 21 deletions
diff --git a/tests/unit/db/test_datasets.py b/tests/unit/db/test_datasets.py index 38de0e2..39f4af9 100644 --- a/tests/unit/db/test_datasets.py +++ b/tests/unit/db/test_datasets.py @@ -3,10 +3,10 @@ from unittest import mock, TestCase from gn3.db.datasets import ( retrieve_dataset_name, - retrieve_riset_fields, - retrieve_geno_riset_fields, - retrieve_publish_riset_fields, - retrieve_probeset_riset_fields) + retrieve_group_fields, + retrieve_geno_group_fields, + retrieve_publish_group_fields, + retrieve_probeset_group_fields) class TestDatasetsDBFunctions(TestCase): """Test cases for datasets functions.""" @@ -40,9 +40,9 @@ class TestDatasetsDBFunctions(TestCase): table=table, cols=columns), {"threshold": thresh, "name": dataset_name}) - def test_retrieve_probeset_riset_fields(self): + def test_retrieve_probeset_group_fields(self): """ - Test that the `riset` and `riset_id` fields are retrieved appropriately + Test that the `group` and `group_id` fields are retrieved appropriately for the 'ProbeSet' trait type. """ for trait_name, expected in [ @@ -52,7 +52,7 @@ class TestDatasetsDBFunctions(TestCase): with db_mock.cursor() as cursor: cursor.execute.return_value = () self.assertEqual( - retrieve_probeset_riset_fields(trait_name, db_mock), + retrieve_probeset_group_fields(trait_name, db_mock), expected) cursor.execute.assert_called_once_with( ( @@ -63,34 +63,34 @@ class TestDatasetsDBFunctions(TestCase): " AND ProbeSetFreeze.Name = %(name)s"), {"name": trait_name}) - def test_retrieve_riset_fields(self): + def test_retrieve_group_fields(self): """ - Test that the riset fields are set up correctly for the different trait + Test that the group fields are set up correctly for the different trait types. """ for trait_type, trait_name, dataset_info, expected in [ ["Publish", "pubTraitName01", {"dataset_name": "pubDBName01"}, - {"dataset_name": "pubDBName01", "riset": ""}], + {"dataset_name": "pubDBName01", "group": ""}], ["ProbeSet", "prbTraitName01", {"dataset_name": "prbDBName01"}, - {"dataset_name": "prbDBName01", "riset": ""}], + {"dataset_name": "prbDBName01", "group": ""}], ["Geno", "genoTraitName01", {"dataset_name": "genoDBName01"}, - {"dataset_name": "genoDBName01", "riset": ""}], - ["Temp", "tempTraitName01", {}, {"riset": ""}], + {"dataset_name": "genoDBName01", "group": ""}], + ["Temp", "tempTraitName01", {}, {"group": ""}], ]: db_mock = mock.MagicMock() with self.subTest( trait_type=trait_type, trait_name=trait_name, dataset_info=dataset_info): with db_mock.cursor() as cursor: - cursor.execute.return_value = ("riset_name", 0) + cursor.execute.return_value = ("group_name", 0) self.assertEqual( - retrieve_riset_fields( + retrieve_group_fields( trait_type, trait_name, dataset_info, db_mock), expected) - def test_retrieve_publish_riset_fields(self): + def test_retrieve_publish_group_fields(self): """ - Test that the `riset` and `riset_id` fields are retrieved appropriately + Test that the `group` and `group_id` fields are retrieved appropriately for the 'Publish' trait type. """ for trait_name, expected in [ @@ -100,7 +100,7 @@ class TestDatasetsDBFunctions(TestCase): with db_mock.cursor() as cursor: cursor.execute.return_value = () self.assertEqual( - retrieve_publish_riset_fields(trait_name, db_mock), + retrieve_publish_group_fields(trait_name, db_mock), expected) cursor.execute.assert_called_once_with( ( @@ -110,9 +110,9 @@ class TestDatasetsDBFunctions(TestCase): " AND PublishFreeze.Name = %(name)s"), {"name": trait_name}) - def test_retrieve_geno_riset_fields(self): + def test_retrieve_geno_group_fields(self): """ - Test that the `riset` and `riset_id` fields are retrieved appropriately + Test that the `group` and `group_id` fields are retrieved appropriately for the 'Geno' trait type. """ for trait_name, expected in [ @@ -122,7 +122,7 @@ class TestDatasetsDBFunctions(TestCase): with db_mock.cursor() as cursor: cursor.execute.return_value = () self.assertEqual( - retrieve_geno_riset_fields(trait_name, db_mock), + retrieve_geno_group_fields(trait_name, db_mock), expected) cursor.execute.assert_called_once_with( ( |