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Diffstat (limited to 'tests/unit/computations/test_biweight.py')
-rw-r--r-- | tests/unit/computations/test_biweight.py | 21 |
1 files changed, 21 insertions, 0 deletions
diff --git a/tests/unit/computations/test_biweight.py b/tests/unit/computations/test_biweight.py new file mode 100644 index 0000000..ad404f1 --- /dev/null +++ b/tests/unit/computations/test_biweight.py @@ -0,0 +1,21 @@ +"""test for biweight script""" +from unittest import TestCase +from unittest import mock + +from gn3.computations.biweight import calculate_biweight_corr + + +class TestBiweight(TestCase): + """test class for biweight""" + + @mock.patch("gn3.computations.biweight.subprocess.check_output") + def test_calculate_biweight_corr(self, mock_check_output): + """test for calculate_biweight_corr func""" + mock_check_output.return_value = "0.1 0.5" + results = calculate_biweight_corr(command="Rscript", + path_to_script="./r_script.R", + trait_vals=[ + 1.2, 1.1, 1.9], + target_vals=[1.9, 0.4, 1.1]) + + self.assertEqual(results, (0.1, 0.5)) |