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-rw-r--r--tests/unit/computations/test_biweight.py21
1 files changed, 21 insertions, 0 deletions
diff --git a/tests/unit/computations/test_biweight.py b/tests/unit/computations/test_biweight.py
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+++ b/tests/unit/computations/test_biweight.py
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+"""test for biweight script"""
+from unittest import TestCase
+from unittest import mock
+
+from gn3.computations.biweight import calculate_biweight_corr
+
+
+class TestBiweight(TestCase):
+ """test class for biweight"""
+
+ @mock.patch("gn3.computations.biweight.subprocess.check_output")
+ def test_calculate_biweight_corr(self, mock_check_output):
+ """test for calculate_biweight_corr func"""
+ mock_check_output.return_value = "0.1 0.5"
+ results = calculate_biweight_corr(command="Rscript",
+ path_to_script="./r_script.R",
+ trait_vals=[
+ 1.2, 1.1, 1.9],
+ target_vals=[1.9, 0.4, 1.1])
+
+ self.assertEqual(results, (0.1, 0.5))