diff options
Diffstat (limited to 'tests/integration')
-rw-r--r-- | tests/integration/test_datasets.py | 41 | ||||
-rw-r--r-- | tests/integration/test_traits.py | 72 |
2 files changed, 0 insertions, 113 deletions
diff --git a/tests/integration/test_datasets.py b/tests/integration/test_datasets.py deleted file mode 100644 index f97d970..0000000 --- a/tests/integration/test_datasets.py +++ /dev/null @@ -1,41 +0,0 @@ -"""This module contains integration tests for datasets""" -from unittest import TestCase -from unittest import mock - -from collections import namedtuple -from gn3.app import create_app - - -class DatasetIntegrationTests(TestCase): - """class contains integration tests for datasets""" - - def setUp(self): - self.app = create_app().test_client() - - @mock.patch("gn3.api.datasets.create_dataset") - def test_create_dataset(self, mock_dataset): - """Test for creating dataset object""" - mock_dataset_creator = namedtuple( - 'ProbeSet', ["dataset_name", "dataset_type"]) - new_dataset = mock_dataset_creator("HC_M2_0606_P", "ProbeSet") - mock_dataset.return_value = new_dataset - response = self.app.get( - "/api/dataset/create/HC_M2_0606_P/", follow_redirects=True) - mock_dataset.assert_called_once_with( - dataset_type=None, dataset_name="HC_M2_0606_P") - results = response.get_json()["dataset"] - self.assertEqual(results[1], "ProbeSet") - self.assertEqual(response.status_code, 200) - - @mock.patch("gn3.api.datasets.get_traits_data") - @mock.patch("gn3.api.datasets.database_connector") - def test_fetch_traits_data(self, mock_db, mock_get_trait_data): - """Test api/dataset/fetch_traits_data/d_name/d_type""" - - mock_get_trait_data.return_value = {} - mock_db.return_value = (mock.Mock(), mock.Mock()) - response = self.app.get( - "/api/dataset/fetch_traits_data/Aging-Brain-UCIPublish/Publish", follow_redirects=True) - - self.assertEqual(response.status_code, 200) - self.assertEqual(response.get_json(), {"results": {}}) diff --git a/tests/integration/test_traits.py b/tests/integration/test_traits.py deleted file mode 100644 index 410ba22..0000000 --- a/tests/integration/test_traits.py +++ /dev/null @@ -1,72 +0,0 @@ -"""module contains integration tests for trait endpoints""" -from unittest import TestCase -from unittest import mock - -from gn3.app import create_app - - -class TraitIntegrationTest(TestCase): - """class contains integration tests for\ - traits""" - - def setUp(self): - self.app = create_app().test_client() - - @mock.patch("gn3.api.traits.fetch_trait") - @mock.patch("gn3.api.traits.database_connector") - def test_create_trait(self, mock_database, mock_fetch_trait): - """test the endpoint for creating traits\ - endpoint requires trait name and dataset name""" - mock_database.return_value = (mock.Mock(), mock.Mock()) - trait_results = { - "dataset": None, - "trait_name": "1449593_at", - "trait_data": { - "BXD11": 8.464, - "BXD12": 8.414, - "BXD13": 8.753, - "BXD15": 8.5, - "BXD16": 8.832 - } - - } - mock_fetch_trait.return_value = trait_results - - results = self.app.get( - "/api/trait/1449593_at/HC_M2_0606_P", follow_redirects=True) - - trait_data = results.get_json() - - self.assertEqual(mock_database.call_count, 1) - self.assertEqual(results.status_code, 200) - self.assertEqual(trait_data, trait_results) - - @mock.patch("gn3.api.traits.get_trait_info_data") - def test_retrieve_trait_info(self, mock_get_trait_info): - """integration test for endpoints for retrieving\ - trait info expects the dataset of trait to have been - created""" - - trait_post_data = { - "trait": {"trait_name": ""}, - "trait_dataset": {"dataset_name": ""} - } - - expected_api_results = { - "description": "trait description", - "chr": "", - "locus": "", - "mb": "", - "abbreviation": "trait_abbreviation", - "trait_display_name": "trait_name" - - } - mock_get_trait_info.return_value = expected_api_results - - trait_info = self.app.post( - "/api/trait/trait_info/144_at", json=trait_post_data, follow_redirects=True) - - trait_info_results = trait_info.get_json() - - self.assertEqual(trait_info.status_code, 200) - self.assertEqual(trait_info_results, expected_api_results) |