diff options
Diffstat (limited to 'tests/integration/test_gemma.py')
| -rw-r--r-- | tests/integration/test_gemma.py | 27 |
1 files changed, 27 insertions, 0 deletions
diff --git a/tests/integration/test_gemma.py b/tests/integration/test_gemma.py index e434dab..5f4e52b 100644 --- a/tests/integration/test_gemma.py +++ b/tests/integration/test_gemma.py @@ -149,3 +149,30 @@ class GemmaAPITest(unittest.TestCase): key="status") self.assertEqual(response.get_json(), {"status": "test"}) + + @mock.patch("gn3.api.gemma.queue_cmd") + @mock.patch("gn3.api.gemma.generate_gemma_computation_cmd") + @mock.patch("gn3.api.gemma.get_hash_of_files") + @mock.patch("gn3.api.gemma.jsonfile_to_dict") + def test_k_compute(self, mock_json, mock_hash, mock_cmd, + mock_queue_cmd): + """Test /gemma/k-compute/<token>""" + mock_queue_cmd.return_value = "my-unique-id" + mock_json.return_value = { + "geno": "genofile.txt", + "pheno": "phenofile.txt", + "snps": "snpfile.txt", + } + mock_hash.return_value = "hash" + mock_cmd.return_value = ("gemma-wrapper --json -- " + "-debug -g " + "genotype_name.txt " + "-p traitfilename.txt " + "-a genotype_snps.txt " + "-gk > k_output_filename.json") + response = self.app.post("/gemma/k-compute/test-data") + self.assertEqual(response.get_json(), { + "output_file": "hash-k-output.json", + "status": "queued", + "unique_id": "my-unique-id" + }) |