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-rw-r--r--scripts/rqtl_wrapper.R2
1 files changed, 1 insertions, 1 deletions
diff --git a/scripts/rqtl_wrapper.R b/scripts/rqtl_wrapper.R
index f6788c5..7518175 100644
--- a/scripts/rqtl_wrapper.R
+++ b/scripts/rqtl_wrapper.R
@@ -167,7 +167,7 @@ if (!is.null(opt$addcovar)) {
if (!is.null(opt$pstrata)) {
covar_names = trait_names[3:length(trait_names) - 1]
} else {
- covar_names = trait_names[3:length(trait_names)]
+ covar_names = trait_names[2:length(trait_names)]
}
covars <- pull.pheno(cross_object, covar_names)
}