diff options
Diffstat (limited to 'qtlfilesexport.py')
| -rw-r--r-- | qtlfilesexport.py | 7 |
1 files changed, 7 insertions, 0 deletions
diff --git a/qtlfilesexport.py b/qtlfilesexport.py index 1db4ab6..799de31 100644 --- a/qtlfilesexport.py +++ b/qtlfilesexport.py @@ -9,6 +9,7 @@ replacing the variables in the angled brackets with the appropriate values """ from gn3.computations.slink import slink from gn3.db_utils import database_connector +from gn3.computations.qtlreaper import run_reaper from gn3.computations.heatmap import export_trait_data from gn3.db.traits import retrieve_trait_data, retrieve_trait_info from gn3.db.genotypes import build_genotype_file, load_genotype_samples @@ -57,5 +58,11 @@ def main(): generate_traits_file(strains_values, trait_values, traits_filename) print("Generated file: {}".format(traits_filename)) + main_output, permutations_output = run_reaper( + genotype_filename, traits_filename, separate_nperm_output=True) + + print("Main output: {}, Permutation output: {}".format( + main_output, permutations_output)) + if __name__ == "__main__": main() |