diff options
Diffstat (limited to 'guix.scm')
| -rw-r--r-- | guix.scm | 22 |
1 files changed, 8 insertions, 14 deletions
@@ -17,16 +17,13 @@ ;;; You should have received a copy of the GNU General Public License ;;; along with genenetwork3. If not, see https://www.gnu.org/licenses/. -;; To use this file to build HEAD of gemma: -;; -;; env GUIX_PACKAGE_PATH=~/guix-bioinformatics/ guix build -f guix.scm -;; -;; After checking out the git repo -;; cd ~ ; git clone https://git.genenetwork.org/guix-bioinformatics/guix-bioinformatics +;; Make sure you have the +;; https://git.genenetwork.org/guix-bioinformatics/guix-bioinformatics channel +;; set up. ;; ;; To get a development container (e.g., run in emacs shell). ;; -;; env GUIX_PACKAGE_PATH=~/guix-bioinformatics/ guix environment -C -l guix.scm +;; guix shell -C -Df guix.scm (use-modules (gn packages gemma) (gn packages python) @@ -68,27 +65,24 @@ ("python-bcrypt" ,python-bcrypt) ("python-flask" ,python-flask) ("python-flask-cors" ,python-flask-cors) + ("python-flask-socketio" ,python-flask-socketio) ("python-ipfshttpclient" ,python-ipfshttpclient) ("python-mypy" ,python-mypy) ("python-mypy-extensions" ,python-mypy-extensions) ("python-mysqlclient" ,python-mysqlclient) ("python-numpy" ,python-numpy) + ("python-pandas" ,python-pandas) + ("python-pingouin" ,python-pingouin) ("python-plotly" ,python-plotly) ("python-pylint" ,python-pylint) ("python-redis" ,python-redis) ("python-requests" ,python-requests) ("python-scipy" ,python-scipy) - ("python-flask-socketio" ,python-flask-socketio) - ("python-sqlalchemy-stubs" - ,python-sqlalchemy-stubs) ("r-optparse" ,r-optparse) ("r-qtl" ,r-qtl) + ("r-rjson" ,r-rjson) ("r-stringi" ,r-stringi) ("r-wgcna" ,r-wgcna) - ("r-rjson" ,r-rjson) - ("python-plotly" ,python-plotly) - ("python-pandas" ,python-pandas) - ("python-pingouin" ,python-pingouin) ("rust-qtlreaper" ,rust-qtlreaper))) (build-system python-build-system) (home-page "https://github.com/genenetwork/genenetwork3") |