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-rw-r--r--gn3/db/datasets.py18
1 files changed, 18 insertions, 0 deletions
diff --git a/gn3/db/datasets.py b/gn3/db/datasets.py
index 9121ec2..58bbcf5 100644
--- a/gn3/db/datasets.py
+++ b/gn3/db/datasets.py
@@ -38,6 +38,24 @@ def retrieve_sample_list(group: str):
samplelist = headers[3:]
return samplelist
+def retrieve_mrna_group_name(connection: Any, probeset_id: int):
+ """
+ Given the trait id (ProbeSet.Id in the database), retrieve the name
+ of the group the dataset belongs to.
+ """
+ query = (
+ "SELECT iset.Name "
+ "FROM ProbeSet AS ps "
+ "INNER JOIN ProbeSetXRef AS px ON ps.Id = px.ProbeSetId "
+ "INNER JOIN InbredSet AS id ON px.InbredSetId = is.Id "
+ "WHERE ps.Id = %(probeset_id)s")
+ with connection.cursor() as cursor:
+ cursor.execute(query, {"probeset_id": probeset_id})
+ res = cursor.fetchone()
+ if res:
+ return res[0]
+ return None
+
def retrieve_phenotype_group_name(connection: Any, dataset_id: int):
"""
Given the dataset id (PublishFreeze.Id in the database), retrieve the name