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-rw-r--r--gn3/api/heatmaps.py4
-rw-r--r--gn3/app.py7
-rw-r--r--gn3/settings.py12
3 files changed, 21 insertions, 2 deletions
diff --git a/gn3/api/heatmaps.py b/gn3/api/heatmaps.py
index eea3ebe..43ac580 100644
--- a/gn3/api/heatmaps.py
+++ b/gn3/api/heatmaps.py
@@ -15,9 +15,9 @@ def clustered_heatmaps():
"message": "You need to provide at least one trait name."
}), 400
conn, _cursor = database_connector()
- def setup_trait_fullname(trait):
+ def parse_trait_fullname(trait):
name_parts = trait.split(":")
return "{dataset_name}::{trait_name}".format(
- dataset_name=trait[1], trait_name=trait[0])
+ dataset_name=name_parts[1], trait_name=name_parts[0])
traits_fullnames = [parse_trait_fullname(trait) for trait in traits_names]
return jsonify(build_heatmap(traits_fullnames, conn)), 200
diff --git a/gn3/app.py b/gn3/app.py
index b4b08d0..6b4c57e 100644
--- a/gn3/app.py
+++ b/gn3/app.py
@@ -11,6 +11,7 @@ from gn3.api.heatmaps import heatmaps
from gn3.api.correlation import correlation
from gn3.api.data_entry import data_entry
+from flask_cors import CORS
def create_app(config: Union[Dict, str, None] = None) -> Flask:
"""Create a new flask object"""
@@ -18,6 +19,12 @@ def create_app(config: Union[Dict, str, None] = None) -> Flask:
# Load default configuration
app.config.from_object("gn3.settings")
+ CORS(
+ app,
+ origins=app.config["CORS_ORIGINS"],
+ allow_headers=app.config["CORS_HEADERS"],
+ supports_credentials=True, intercept_exceptions=False)
+
# Load environment configuration
if "GN3_CONF" in os.environ:
app.config.from_envvar('GN3_CONF')
diff --git a/gn3/settings.py b/gn3/settings.py
index a08f846..9d7bba3 100644
--- a/gn3/settings.py
+++ b/gn3/settings.py
@@ -31,3 +31,15 @@ REAPER_COMMAND = "{}/bin/qtlreaper".format(os.environ.get("GUIX_ENVIRONMENT"))
# genotype files
GENOTYPE_FILES = os.environ.get(
"GENOTYPE_FILES", "{}/genotype_files/genotype".format(os.environ.get("HOME")))
+
+# CROSS-ORIGIN SETUP
+CORS_ORIGINS = [
+ "http://localhost:*",
+ "http://127.0.0.1:*"
+]
+
+CORS_HEADERS = [
+ "Content-Type",
+ "Authorization",
+ "Access-Control-Allow-Credentials"
+]