diff options
Diffstat (limited to 'gn3')
-rw-r--r-- | gn3/commands.py | 29 |
1 files changed, 29 insertions, 0 deletions
diff --git a/gn3/commands.py b/gn3/commands.py index 50b6d29..9692f62 100644 --- a/gn3/commands.py +++ b/gn3/commands.py @@ -1,9 +1,13 @@ """Procedures used to work with the various bio-informatics cli commands""" +from datetime import datetime from typing import Dict from typing import List from typing import Optional +from uuid import uuid4 +from redis.client import Redis # Used only in type hinting +from gn3.exceptions import RedisConnectionError from gn3.file_utils import lookup_file from gn3.file_utils import jsonfile_to_dict @@ -40,3 +44,28 @@ def compose_gemma_cmd( cmd += (" " " ".join([f" {arg}" for arg in gemma_args])) return cmd + + +def queue_cmd(cmd: str, conn: Redis) -> str: + """Given a command CMD, and a redis connection CONN, queue it in Redis +with an initial status of 'queued'. The following status codes are +supported: + + queued: Unprocessed; Still in the queue + running: Still running + success: Successful completion + error: Erroneous completion + + """ + if not conn.ping(): + raise RedisConnectionError + unique_id = ("cmd::" + f"{datetime.now().strftime('%Y-%m-%d%H-%M%S-%M%S-')}" + f"{str(uuid4())}") + for key, value in {"cmd": cmd, + "result": "", + "status": "queued"}.items(): + conn.hset(key, value, unique_id) + conn.rpush("GN2::job-queue", + unique_id) + return unique_id |