diff options
Diffstat (limited to 'gn3')
| -rw-r--r-- | gn3/computations/__init__.py | 0 | ||||
| -rw-r--r-- | gn3/computations/gemma.py | 14 |
2 files changed, 14 insertions, 0 deletions
diff --git a/gn3/computations/__init__.py b/gn3/computations/__init__.py new file mode 100644 index 0000000..e69de29 --- /dev/null +++ b/gn3/computations/__init__.py diff --git a/gn3/computations/gemma.py b/gn3/computations/gemma.py new file mode 100644 index 0000000..9a972ba --- /dev/null +++ b/gn3/computations/gemma.py @@ -0,0 +1,14 @@ +"""Procedures related gemma computations""" + + +def generate_pheno_txt_file(trait_filename: str, + values: str, + tmpdir: str = "/tmp") -> str: + """Given VALUES, and TMPDIR, generate a valide traits file""" + with open(f"{tmpdir}/gn2/{trait_filename}", "w") as _file: + for value in values: + if value == "x": + _file.write("NA\n") + else: + _file.write(f"{value}\n") + return f"{tmpdir}/gn2/{trait_filename}" |