diff options
Diffstat (limited to 'gn3')
-rw-r--r-- | gn3/computations/qtlreaper.py | 18 |
1 files changed, 18 insertions, 0 deletions
diff --git a/gn3/computations/qtlreaper.py b/gn3/computations/qtlreaper.py index c058e14..3b8e4db 100644 --- a/gn3/computations/qtlreaper.py +++ b/gn3/computations/qtlreaper.py @@ -90,3 +90,21 @@ def run_reaper( subprocess.run(command_list, check=True) return (output_filename, permu_output_filename) + + +def parse_reaper_main_results(results_file): + with open(results_file, "r") as infile: + lines = infile.readlines() + + def __parse_line(line): + items = line.strip().split("\t") + return items[0:2] + [float(item) for item in items[2:]] + + header = lines[0].strip().split("\t") + return [dict(zip(header, __parse_line(line))) for line in lines[1:]] + +def parse_reaper_permutation_results(results_file): + with open(results_file, "r") as infile: + lines = infile.readlines() + + return [float(line.strip()) for line in lines] |