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Diffstat (limited to 'gn3')
-rw-r--r--gn3/db/correlations.py12
1 files changed, 7 insertions, 5 deletions
diff --git a/gn3/db/correlations.py b/gn3/db/correlations.py
index 1743405..268cfdd 100644
--- a/gn3/db/correlations.py
+++ b/gn3/db/correlations.py
@@ -157,11 +157,12 @@ def fetch_symbol_value_pair_dict(
symbol: data_id_dict.get(symbol) for symbol in symbol_list
if data_id_dict.get(symbol) is not None
}
- query = "SELECT Id, value FROM TissueProbeSetData WHERE Id IN %(data_ids)s"
+ query = "SELECT Id, value FROM TissueProbeSetData WHERE Id IN ({})".format(
+ ",".join(f"%(id{i})s" for i in range(data_ids.values())))
with conn.cursor() as cursor:
cursor.execute(
query,
- data_ids=tuple(data_ids.values()))
+ **{f"id{i}": did for i, did in enumerate(data_ids.values())})
value_results = cursor.fetchall()
return {
key: tuple(row[1] for row in value_results if row[0] == key)
@@ -406,14 +407,15 @@ def fetch_sample_ids(
"""
query = (
"SELECT Strain.Id FROM Strain, Species "
- "WHERE Strain.Name IN %(samples_names)s "
+ "WHERE Strain.Name IN ({}) "
"AND Strain.SpeciesId=Species.Id "
- "AND Species.name=%(species_name)s")
+ "AND Species.name=%(species_name)s").format(
+ ",".join(f"%(s{i})s" for i in range(len(sample_names))))
with conn.cursor() as cursor:
cursor.execute(
query,
{
- "samples_names": tuple(sample_names),
+ **{f"s{i}": sname for i, sname in enumerate(sample_names)},
"species_name": species_name
})
return tuple(row[0] for row in cursor.fetchall())