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-rw-r--r--gn3/computations/slink.py2
-rw-r--r--gn3/db/traits.py6
2 files changed, 4 insertions, 4 deletions
diff --git a/gn3/computations/slink.py b/gn3/computations/slink.py
index 23d3d88..5953e6b 100644
--- a/gn3/computations/slink.py
+++ b/gn3/computations/slink.py
@@ -7,7 +7,7 @@ slink:
TODO: Describe what the function does...
"""
import logging
-from typing import List, Tuple, Union, Sequence
+from typing import Union, Sequence
NumType = Union[int, float]
SeqOfNums = Sequence[NumType]
diff --git a/gn3/db/traits.py b/gn3/db/traits.py
index ea35d7e..29c91a6 100644
--- a/gn3/db/traits.py
+++ b/gn3/db/traits.py
@@ -166,8 +166,7 @@ def set_confidential_field(trait_info):
"confidential": 1 if (
trait_info.get("pre_publication_description", None)
and not trait_info.get("pubmed_id", None)) else 0}
- else:
- return trait_info
+ return trait_info
def retrieve_probeset_trait_info(trait_data_source: Dict[str, Any], conn: Any):
"""Retrieve trait information for type `ProbeSet` traits.
@@ -344,13 +343,14 @@ def set_riset_fields(trait_info, conn):
def retrieve_trait_info(
trait_type: str, trait_name: str, trait_dataset_id: int,
- trait_dataset_name: str, conn: Any, QTL=None):
+ trait_dataset_name: str, conn: Any, qtl=None):
"""Retrieves the trait information.
https://github.com/genenetwork/genenetwork1/blob/master/web/webqtl/base/webqtlTrait.py#L397-L456
This function, or the dependent functions, might be incomplete as they are
currently."""
+ # pylint: disable=[R0913]
trait_info_function_table = {
"Publish": retrieve_publish_trait_info,
"ProbeSet": retrieve_probeset_trait_info,