diff options
Diffstat (limited to 'gn3')
| -rw-r--r-- | gn3/computations/partial_correlations.py | 16 |
1 files changed, 16 insertions, 0 deletions
diff --git a/gn3/computations/partial_correlations.py b/gn3/computations/partial_correlations.py index 1a6868a..fb372a9 100644 --- a/gn3/computations/partial_correlations.py +++ b/gn3/computations/partial_correlations.py @@ -196,6 +196,22 @@ def good_dataset_samples_indexes( samples_from_file.index(good) for good in set(samples).intersection(set(samples_from_file)))) +def determine_partials( + primary_vals, control_vals, all_target_trait_names, + all_target_trait_values, method): + """ + This **WILL** be a migration of + `web.webqtl.correlation.correlationFunction.determinePartialsByR` function + in GeneNetwork1. + + The function in GeneNetwork1 contains code written in R that is then used to + compute the partial correlations. + """ + ## This function is not implemented at this stage + return tuple( + primary_vals, control_vals, all_target_trait_names, + all_target_trait_values, method) + def compute_partial_correlations_fast(# pylint: disable=[R0913, R0914] samples, primary_vals, control_vals, database_filename, fetched_correlations, method: str, correlation_type: str) -> Tuple[ |