aboutsummaryrefslogtreecommitdiff
path: root/gn3
diff options
context:
space:
mode:
Diffstat (limited to 'gn3')
-rw-r--r--gn3/db/correlations.py8
1 files changed, 5 insertions, 3 deletions
diff --git a/gn3/db/correlations.py b/gn3/db/correlations.py
index 05c0809..ab4dc2c 100644
--- a/gn3/db/correlations.py
+++ b/gn3/db/correlations.py
@@ -2,7 +2,7 @@
This module will hold functions that are used in the (partial) correlations
feature to access the database to retrieve data needed for computations.
"""
-
+import os
from functools import reduce
from typing import Any, Dict, Tuple, Union
@@ -28,11 +28,13 @@ def get_filename(conn: Any, target_db_name: str, text_files_dir: str) -> Union[
(target_db_name,))
result = cursor.fetchone()
if result:
- return "ProbeSetFreezeId_{tid}_FullName_{fname}.txt".format(
+ filename = "ProbeSetFreezeId_{tid}_FullName_{fname}.txt".format(
tid=result[0],
fname=result[1].replace(' ', '_').replace('/', '_'))
+ return ((filename in os.listdir(text_file_dir))
+ and f"{text_files_dir}/{filename}")
- return ""
+ return False
def build_temporary_literature_table(
conn: Any, species: str, gene_id: int, return_number: int) -> str: