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Diffstat (limited to 'gn3/settings.py')
| -rw-r--r-- | gn3/settings.py | 4 |
1 files changed, 4 insertions, 0 deletions
diff --git a/gn3/settings.py b/gn3/settings.py index d137370..a08f846 100644 --- a/gn3/settings.py +++ b/gn3/settings.py @@ -27,3 +27,7 @@ BIWEIGHT_RSCRIPT = "~/genenetwork3/scripts/calculate_biweight.R" # qtlreaper command REAPER_COMMAND = "{}/bin/qtlreaper".format(os.environ.get("GUIX_ENVIRONMENT")) + +# genotype files +GENOTYPE_FILES = os.environ.get( + "GENOTYPE_FILES", "{}/genotype_files/genotype".format(os.environ.get("HOME"))) |