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Diffstat (limited to 'gn3/settings.py')
| -rw-r--r-- | gn3/settings.py | 7 |
1 files changed, 7 insertions, 0 deletions
diff --git a/gn3/settings.py b/gn3/settings.py index f4866d5..a08f846 100644 --- a/gn3/settings.py +++ b/gn3/settings.py @@ -24,3 +24,10 @@ GN2_BASE_URL = "http://www.genenetwork.org/" # biweight script BIWEIGHT_RSCRIPT = "~/genenetwork3/scripts/calculate_biweight.R" + +# qtlreaper command +REAPER_COMMAND = "{}/bin/qtlreaper".format(os.environ.get("GUIX_ENVIRONMENT")) + +# genotype files +GENOTYPE_FILES = os.environ.get( + "GENOTYPE_FILES", "{}/genotype_files/genotype".format(os.environ.get("HOME"))) |