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Diffstat (limited to 'gn3/settings.py')
| -rw-r--r-- | gn3/settings.py | 4 |
1 files changed, 4 insertions, 0 deletions
diff --git a/gn3/settings.py b/gn3/settings.py index 6eec2a1..78ae7cb 100644 --- a/gn3/settings.py +++ b/gn3/settings.py @@ -29,6 +29,10 @@ WGCNA_RSCRIPT = "wgcna_analysis.R" # qtlreaper command REAPER_COMMAND = f"{os.environ.get('GUIX_ENVIRONMENT')}/bin/qtlreaper" +# correlation command + +CORRELATION_COMMAND = f"{os.environ.get('GUIX_ENVIRONMENT')}/bin/correlation_rust" + # genotype files GENOTYPE_FILES = os.environ.get( "GENOTYPE_FILES", f"{os.environ.get('HOME')}/genotype_files/genotype") |