diff options
Diffstat (limited to 'gn3/settings.py')
| -rw-r--r-- | gn3/settings.py | 12 |
1 files changed, 9 insertions, 3 deletions
diff --git a/gn3/settings.py b/gn3/settings.py index 57c63df..6eec2a1 100644 --- a/gn3/settings.py +++ b/gn3/settings.py @@ -13,11 +13,13 @@ REDIS_JOB_QUEUE = "GN3::job-queue" TMPDIR = os.environ.get("TMPDIR", tempfile.gettempdir()) RQTL_WRAPPER = "rqtl_wrapper.R" +# SPARQL endpoint +SPARQL_ENDPOINT = "http://localhost:8891/sparql" + # SQL confs SQL_URI = os.environ.get( "SQL_URI", "mysql://webqtlout:webqtlout@localhost/db_webqtl") SECRET_KEY = "password" -SQLALCHEMY_TRACK_MODIFICATIONS = False # gn2 results only used in fetching dataset info GN2_BASE_URL = "http://www.genenetwork.org/" @@ -25,11 +27,11 @@ GN2_BASE_URL = "http://www.genenetwork.org/" # wgcna script WGCNA_RSCRIPT = "wgcna_analysis.R" # qtlreaper command -REAPER_COMMAND = "{}/bin/qtlreaper".format(os.environ.get("GUIX_ENVIRONMENT")) +REAPER_COMMAND = f"{os.environ.get('GUIX_ENVIRONMENT')}/bin/qtlreaper" # genotype files GENOTYPE_FILES = os.environ.get( - "GENOTYPE_FILES", "{}/genotype_files/genotype".format(os.environ.get("HOME"))) + "GENOTYPE_FILES", f"{os.environ.get('HOME')}/genotype_files/genotype") # CROSS-ORIGIN SETUP def parse_env_cors(default): @@ -53,3 +55,7 @@ CORS_HEADERS = [ GNSHARE = os.environ.get("GNSHARE", "/gnshare/gn/") TEXTDIR = f"{GNSHARE}/web/ProbeSetFreeze_DataMatrix" + +ROUND_TO = 10 + +MULTIPROCESSOR_PROCS = 6 # Number of processes to spawn |