diff options
Diffstat (limited to 'gn3/heatmaps.py')
| -rw-r--r-- | gn3/heatmaps.py | 4 |
1 files changed, 3 insertions, 1 deletions
diff --git a/gn3/heatmaps.py b/gn3/heatmaps.py index 79c4082..1a528ba 100644 --- a/gn3/heatmaps.py +++ b/gn3/heatmaps.py @@ -6,6 +6,8 @@ from pathlib import Path from functools import reduce from typing import Any, Dict, Union, Sequence +from flask import current_app as app + import numpy as np import plotly.graph_objects as go # type: ignore import plotly.figure_factory as ff # type: ignore @@ -140,7 +142,7 @@ def build_heatmap( traits_filename) main_output, _permutations_output = run_reaper( - genotype_filename, traits_filename, separate_nperm_output=True) + app.config['REAPER_COMMAND'], genotype_filename, traits_filename, separate_nperm_output=True) qtlresults = parse_reaper_main_results(main_output) organised = organise_reaper_main_results(qtlresults) |