diff options
Diffstat (limited to 'gn3/db')
| -rw-r--r-- | gn3/db/datasets.py | 4 |
1 files changed, 3 insertions, 1 deletions
diff --git a/gn3/db/datasets.py b/gn3/db/datasets.py index 8839f2e..28fe0fe 100644 --- a/gn3/db/datasets.py +++ b/gn3/db/datasets.py @@ -4,6 +4,8 @@ This module contains functions relating to specific trait dataset manipulation import os from typing import Any +from flask import current_app as app + def retrieve_sample_list(group: str): """ Get the sample list for a group (a category that datasets belong to) @@ -14,7 +16,7 @@ def retrieve_sample_list(group: str): samplelist = [] genofile_path = ( - f'{os.environ.get("GENENETWORK_FILES", "/home/gn2/production/genotype_files/")}' + f'{app.config.get("GENENETWORK_FILES", "/home/gn2/production/genotype_files/")}' f'/genotype/{group}.geno' ) if os.path.isfile(genofile_path): |