diff options
Diffstat (limited to 'gn3/db')
| -rw-r--r-- | gn3/db/sample_data.py | 14 |
1 files changed, 7 insertions, 7 deletions
diff --git a/gn3/db/sample_data.py b/gn3/db/sample_data.py index 07810e0..4cf1058 100644 --- a/gn3/db/sample_data.py +++ b/gn3/db/sample_data.py @@ -421,7 +421,7 @@ def delete_sample_data( conn=conn, probeset_id=int(probeset_id), dataset_name=dataset_name, - strain_name=extract_strain_name(csv_header, original_data), + strain_name=extract_strain_name(csv_header, data), ) none_case_attrs: Dict[str, Any] = { "Strain Name": lambda: 0, @@ -434,7 +434,7 @@ def delete_sample_data( conn=conn, publishxref_id=int(trait_name), phenotype_id=phenotype_id, - strain_name=extract_strain_name(csv_header, original_data), + strain_name=extract_strain_name(csv_header, data), ) none_case_attrs: Dict[str, Any] = { "Strain Name": lambda: 0, @@ -527,7 +527,7 @@ def insert_sample_data( conn=conn, probeset_id=int(probeset_id), dataset_name=dataset_name, - strain_name=extract_strain_name(csv_header, original_data), + strain_name=extract_strain_name(csv_header, data), ) none_case_attrs: Dict[str, Any] = { "Strain Name": lambda _: 0, @@ -540,13 +540,13 @@ def insert_sample_data( conn=conn, publishxref_id=int(trait_name), phenotype_id=phenotype_id, - strain_name=extract_strain_name(csv_header, original_data), + strain_name=extract_strain_name(csv_header, data), ) none_case_attrs: Dict[str, Any] = { "Strain Name": lambda _: 0, - "Value": lambda: __insert_data(conn, "PublishData", x), - "SE": lambda: __insert_data(conn, "PublishSE", x), - "Count": lambda: __insert_data(conn, "NStrain", x), + "Value": lambda x: __insert_data(conn, "PublishData", x), + "SE": lambda x: __insert_data(conn, "PublishSE", x), + "Count": lambda x: __insert_data(conn, "NStrain", x), } try: |