diff options
Diffstat (limited to 'gn3/db')
| -rw-r--r-- | gn3/db/correlations.py | 10 |
1 files changed, 6 insertions, 4 deletions
diff --git a/gn3/db/correlations.py b/gn3/db/correlations.py index c838597..898de75 100644 --- a/gn3/db/correlations.py +++ b/gn3/db/correlations.py @@ -4,7 +4,7 @@ feature to access the database to retrieve data needed for computations. """ from functools import reduce -from typing import Any, Dict, Tuple +from typing import Any, Dict, Tuple, Union from gn3.random import random_string from gn3.data_helpers import partition_all @@ -12,7 +12,8 @@ from gn3.db.species import translate_to_mouse_gene_id from gn3.computations.partial_correlations import correlations_of_all_tissue_traits -def get_filename(target_db_name: str, conn: Any) -> str: +def get_filename(conn: Any, target_db_name: str, text_files_dir: str) -> Union[ + str, bool]: """ Retrieve the name of the reference database file with which correlations are computed. @@ -456,8 +457,9 @@ def build_query_tissue_corr(db_type, temp_table, sample_id_columns, joins): def fetch_all_database_data(# pylint: disable=[R0913, R0914] conn: Any, species: str, gene_id: int, trait_symbol: str, - samples: Tuple[str, ...], db_type: str, db_name: str, method: str, - return_number: int, probeset_freeze_id: int) -> Tuple[Any, Any]: + samples: Tuple[str, ...], dataset: dict, method: str, + return_number: int, probeset_freeze_id: int) -> Tuple[ + Tuple[float], int]: """ This is a migration of the `web.webqtl.correlation.CorrelationPage.fetchAllDatabaseData` function in |