diff options
Diffstat (limited to 'gn3/db')
-rw-r--r-- | gn3/db/__init__.py | 5 | ||||
-rw-r--r-- | gn3/db/metadata_audit.py | 26 |
2 files changed, 31 insertions, 0 deletions
diff --git a/gn3/db/__init__.py b/gn3/db/__init__.py index d89dbf4..175a640 100644 --- a/gn3/db/__init__.py +++ b/gn3/db/__init__.py @@ -5,21 +5,26 @@ from dataclasses import dataclass, asdict, astuple from typing_extensions import Protocol from MySQLdb import escape_string +from gn3.db.metadata_audit import MetadataAudit from gn3.db.phenotypes import Phenotype from gn3.db.phenotypes import PublishXRef from gn3.db.phenotypes import Publication +from gn3.db.metadata_audit import metadata_audit_mapping from gn3.db.phenotypes import phenotype_mapping from gn3.db.phenotypes import publish_x_ref_mapping from gn3.db.phenotypes import publication_mapping + TABLEMAP = { + "metadata_audit": metadata_audit_mapping, "Phenotype": phenotype_mapping, "PublishXRef": publish_x_ref_mapping, "Publication": publication_mapping, } DATACLASSMAP = { + "MetadataAudit": MetadataAudit, "Phenotype": Phenotype, "PublishXRef": PublishXRef, "Publication": Publication, diff --git a/gn3/db/metadata_audit.py b/gn3/db/metadata_audit.py new file mode 100644 index 0000000..6e22b32 --- /dev/null +++ b/gn3/db/metadata_audit.py @@ -0,0 +1,26 @@ +# pylint: disable=[R0902, R0903] +"""This contains all the necessary functions that access the metadata_audit +table from the db + +""" +from dataclasses import dataclass +from typing import Optional + + +@dataclass(frozen=True) +class MetadataAudit: + """Data Type that represents a Phenotype""" + dataset_id: int + editor: str + json_data: str + time_stamp: Optional[str] = None + + +# Mapping from the MetadataAudit dataclass to the actual column names in the +# database +metadata_audit_mapping = { + "dataset_id": "dataset_id", + "editor": "editor", + "json_data": "json_data", + "time_stamp": "time_stamp", +} |