diff options
Diffstat (limited to 'gn3/db')
| -rw-r--r-- | gn3/db/correlations.py | 8 |
1 files changed, 5 insertions, 3 deletions
diff --git a/gn3/db/correlations.py b/gn3/db/correlations.py index 05c0809..ab4dc2c 100644 --- a/gn3/db/correlations.py +++ b/gn3/db/correlations.py @@ -2,7 +2,7 @@ This module will hold functions that are used in the (partial) correlations feature to access the database to retrieve data needed for computations. """ - +import os from functools import reduce from typing import Any, Dict, Tuple, Union @@ -28,11 +28,13 @@ def get_filename(conn: Any, target_db_name: str, text_files_dir: str) -> Union[ (target_db_name,)) result = cursor.fetchone() if result: - return "ProbeSetFreezeId_{tid}_FullName_{fname}.txt".format( + filename = "ProbeSetFreezeId_{tid}_FullName_{fname}.txt".format( tid=result[0], fname=result[1].replace(' ', '_').replace('/', '_')) + return ((filename in os.listdir(text_file_dir)) + and f"{text_files_dir}/{filename}") - return "" + return False def build_temporary_literature_table( conn: Any, species: str, gene_id: int, return_number: int) -> str: |