diff options
Diffstat (limited to 'gn3/db')
| -rw-r--r-- | gn3/db/sample_data.py | 24 |
1 files changed, 12 insertions, 12 deletions
diff --git a/gn3/db/sample_data.py b/gn3/db/sample_data.py index d8232cb..29a35d6 100644 --- a/gn3/db/sample_data.py +++ b/gn3/db/sample_data.py @@ -68,20 +68,20 @@ FROM PublishFreeze pf JOIN PublishXRef px ON px.InbredSetId = pf.InbredSetId JOIN PublishData pd ON pd.Id = px.DataId JOIN Strain st ON pd.StrainId = st.Id LEFT JOIN PublishSE ps ON ps.DataId = pd.Id AND ps.StrainId = pd.StrainId LEFT JOIN NStrain ns ON ns.DataId = pd.Id AND ns.StrainId = pd.StrainId - AND px.Id = %s AND px.PhenotypeId = %s +WHERE px.Id = %s AND px.PhenotypeId = %s ORDER BY st.Name""", (trait_name, phenotype_id)) - sample_data = {} - for data in cursor.fetchall(): - this_data = {} - sample, value, error, n_cases = data - sample_data[sample] = { - 'value': value, - 'error': error, - 'n_cases:': n_cases - } - - return sample_data + sample_data = {} + for data in cursor.fetchall(): + this_data = {} + sample, value, error, n_cases = data + sample_data[sample] = { + 'value': value, + 'error': error, + 'n_cases:': n_cases + } + + return sample_data def get_trait_csv_sample_data( conn: Any, trait_name: int, phenotype_id: int |