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Diffstat (limited to 'gn3/db/webqtlDatabaseFunction.py')
| -rw-r--r-- | gn3/db/webqtlDatabaseFunction.py | 52 |
1 files changed, 0 insertions, 52 deletions
diff --git a/gn3/db/webqtlDatabaseFunction.py b/gn3/db/webqtlDatabaseFunction.py deleted file mode 100644 index 9e9982b..0000000 --- a/gn3/db/webqtlDatabaseFunction.py +++ /dev/null @@ -1,52 +0,0 @@ -""" -# Copyright (C) University of Tennessee Health Science Center, Memphis, TN. -# -# This program is free software: you can redistribute it and/or modify it -# under the terms of the GNU Affero General Public License -# as published by the Free Software Foundation, either version 3 of the -# License, or (at your option) any later version. -# -# This program is distributed in the hope that it will be useful, -# but WITHOUT ANY WARRANTY; without even the implied warranty of -# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. -# See the GNU Affero General Public License for more details. -# -# This program is available from Source Forge: at GeneNetwork Project -# (sourceforge.net/projects/genenetwork/). -# -# Contact Drs. Robert W. Williams and Xiaodong Zhou (2010) -# at rwilliams@uthsc.edu and xzhou15@uthsc.edu -# -# -# -# This module is used by GeneNetwork project (www.genenetwork.org) -""" - -from gn3.db.calls import fetch1 - -from gn3.utility.logger import getLogger -logger = getLogger(__name__) - -########################################################################### -# output: cursor instance -# function: connect to database and return cursor instance -########################################################################### - - -def retrieve_species(group): - """Get the species of a group (e.g. returns string "mouse" on "BXD" - - """ - result = fetch1("select Species.Name from Species, InbredSet where InbredSet.Name = '%s' and InbredSet.SpeciesId = Species.Id" % ( - group), "/cross/"+group+".json", lambda r: (r["species"],))[0] - # logger.debug("retrieve_species result:", result) - return result - - -def retrieve_species_id(group): - """retrieve species id method""" - - result = fetch1("select SpeciesId from InbredSet where Name = '%s'" % ( - group), "/cross/"+group+".json", lambda r: (r["species_id"],))[0] - logger.debug("retrieve_species_id result:", result) - return result |