diff options
Diffstat (limited to 'gn3/db/rdf.py')
| -rw-r--r-- | gn3/db/rdf.py | 15 |
1 files changed, 15 insertions, 0 deletions
diff --git a/gn3/db/rdf.py b/gn3/db/rdf.py index deecefa..3e8d513 100644 --- a/gn3/db/rdf.py +++ b/gn3/db/rdf.py @@ -10,6 +10,21 @@ from pymonad.maybe import Just from gn3.monads import MonadicDict +RDF_PREFIXES = """PREFIX dct: <http://purl.org/dc/terms/> +PREFIX foaf: <http://xmlns.com/foaf/0.1/> +PREFIX generif: <http://www.ncbi.nlm.nih.gov/gene?cmd=Retrieve&dopt=Graphics&list_uids=> +PREFIX gn: <http://genenetwork.org/> +PREFIX owl: <http://www.w3.org/2002/07/owl#> +PREFIX pubmed: <http://rdf.ncbi.nlm.nih.gov/pubmed/> +PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> +PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> +PREFIX taxon: <http://purl.uniprot.org/taxonomy/> +PREFIX up: <http://purl.uniprot.org/core/> +PREFIX xsd: <http://www.w3.org/2001/XMLSchema#> + +""" + + def sparql_query( sparql_conn: SPARQLWrapper, query: str ) -> Tuple[MonadicDict, ...]: |