diff options
Diffstat (limited to 'gn3/db/rdf.py')
-rw-r--r-- | gn3/db/rdf.py | 40 |
1 files changed, 40 insertions, 0 deletions
diff --git a/gn3/db/rdf.py b/gn3/db/rdf.py index 5b62b46..c559774 100644 --- a/gn3/db/rdf.py +++ b/gn3/db/rdf.py @@ -156,6 +156,46 @@ CONSTRUCT { ): response[key] = value.map(get_url_local_name) # type: ignore return response + + +def get_publication_metadata( + sparql_conn: SPARQLWrapper, name: str +): + """Return info about a publication with a given NAME""" + __metadata_query = """ +$prefix + +CONSTRUCT { + gn:publication ?publicationTerm ?publicationValue . + gn:publication ?predicate ?subject . +} WHERE { + $name ?publicationTerm ?publicationValue . + ?publication ?publicationTerm ?publicationValue . + OPTIONAL { + ?subject ?predicate ?publication . + } . + VALUES ?publicationTerm { + gn:pubMedId gn:title gn:volume + gn:abstract gn:pages gn:month gn:year gn:author + } + VALUES ?predicate { + gn:phenotypeOfPublication + } +} +""" + response: MonadicDict = MonadicDict() + + for key, value in sparql_query( + sparql_conn, + Template(__metadata_query) + .substitute( + prefix=RDF_PREFIXES, + name=name + ) + )[0].items(): + response[key] = value + if isinstance(value, str) and not key.endswith("pubMedId"): + response[key] = value.map(get_url_local_name) # type: ignore return response |