diff options
Diffstat (limited to 'gn3/db/correlations.py')
| -rw-r--r-- | gn3/db/correlations.py | 4 |
1 files changed, 3 insertions, 1 deletions
diff --git a/gn3/db/correlations.py b/gn3/db/correlations.py index ab4dc2c..401fd91 100644 --- a/gn3/db/correlations.py +++ b/gn3/db/correlations.py @@ -467,6 +467,8 @@ def fetch_all_database_data(# pylint: disable=[R0913, R0914] `web.webqtl.correlation.CorrelationPage.fetchAllDatabaseData` function in GeneNetwork1. """ + db_type = dataset["dataset_type"] + db_name = dataset["dataset_name"] def __build_query__(sample_ids, temp_table): sample_id_columns = ", ".join(f"T{smpl}.value" for smpl in sample_ids) if db_type == "Publish": @@ -551,4 +553,4 @@ def fetch_all_database_data(# pylint: disable=[R0913, R0914] with conn.cursor() as cursor: cursor.execute(f"DROP TEMPORARY TABLE {temp_table}") - return (tuple(item[0] for item in trait_database), trait_database[0][1]) + return (trait_database[0], trait_database[1]) |