diff options
Diffstat (limited to 'gn3/db/correlations.py')
| -rw-r--r-- | gn3/db/correlations.py | 10 |
1 files changed, 5 insertions, 5 deletions
diff --git a/gn3/db/correlations.py b/gn3/db/correlations.py index 06b3310..f327dc3 100644 --- a/gn3/db/correlations.py +++ b/gn3/db/correlations.py @@ -34,7 +34,7 @@ def get_filename(target_db_name: str, conn: Any) -> str: return "" def build_temporary_literature_table( - species: str, gene_id: int, return_number: int, conn: Any) -> str: + conn: Any, species: str, gene_id: int, return_number: int) -> str: """ Build and populate a temporary table to hold the literature correlation data to be used in computations. @@ -128,7 +128,7 @@ def fetch_literature_correlations( GeneNetwork1. """ temp_table = build_temporary_literature_table( - species, gene_id, return_number, conn) + conn, species, gene_id, return_number) query_fns = { "Geno": fetch_geno_literature_correlations, # "Temp": fetch_temp_literature_correlations, @@ -268,8 +268,8 @@ def fetch_gene_symbol_tissue_value_dict_for_trait( return {} def build_temporary_tissue_correlations_table( - trait_symbol: str, probeset_freeze_id: int, method: str, - return_number: int, conn: Any) -> str: + conn: Any, trait_symbol: str, probeset_freeze_id: int, method: str, + return_number: int) -> str: """ Build a temporary table to hold the tissue correlations data. @@ -320,7 +320,7 @@ def fetch_tissue_correlations(# pylint: disable=R0913 GeneNetwork1. """ temp_table = build_temporary_tissue_correlations_table( - trait_symbol, probeset_freeze_id, method, return_number, conn) + conn, trait_symbol, probeset_freeze_id, method, return_number) with conn.cursor() as cursor: cursor.execute( ( |