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-rw-r--r--gn3/computations/gemma.py11
1 files changed, 11 insertions, 0 deletions
diff --git a/gn3/computations/gemma.py b/gn3/computations/gemma.py
index 2c367ff..f97fa6d 100644
--- a/gn3/computations/gemma.py
+++ b/gn3/computations/gemma.py
@@ -41,6 +41,17 @@ def generate_pheno_txt_file(trait_filename: str,
return f"{tmpdir}/gn2/{trait_filename}"
+def assert_paths_exist(paths: ValuesView) -> bool:
+ """Given a list of PATHS, throw error if any of them do not exist."""
+ for path in paths:
+ if not os.path.isfile(path):
+ if throw_error:
+ raise FileNotFoundError(errno.ENOENT, os.strerror(errno.ENOENT), path)
+ else:
+ return False
+ return True
+
+
# pylint: disable=R0913
def generate_gemma_cmd(gemma_cmd: str,
output_dir: str,